Strain Fitness in Variovorax sp. SCN45 around GFF6553

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
49,262	+				-0.5
49,262	+				+1.4
49,262	+				+0.7
49,263	-				-0.3
49,263	-				-0.0
49,478	+		GFF6552	0.37	-0.5
49,478	+		GFF6552	0.37	+0.1
49,478	+		GFF6552	0.37	+1.0
49,478	+		GFF6552	0.37	+0.4
49,478	+		GFF6552	0.37	-1.4
49,478	+		GFF6552	0.37	+0.4
49,478	+		GFF6552	0.37	-1.4
49,479	-		GFF6552	0.37	+0.0
49,479	-		GFF6552	0.37	-0.8
49,479	-		GFF6552	0.37	-0.1
49,479	-		GFF6552	0.37	+0.3
49,479	-		GFF6552	0.37	+0.1
49,538	+		GFF6552	0.47	-0.6
49,538	+		GFF6552	0.47	-0.5
49,538	+		GFF6552	0.47	-1.1
49,539	-		GFF6552	0.48	-0.7
49,539	-		GFF6552	0.48	-0.2
49,539	-		GFF6552	0.48	+0.8
49,539	-		GFF6552	0.48	+0.5
49,539	-		GFF6552	0.48	+0.4
49,539	-		GFF6552	0.48	-1.3
49,541	+		GFF6552	0.48	-0.8
49,541	+		GFF6552	0.48	-0.9
49,541	+		GFF6552	0.48	-0.4
49,541	+		GFF6552	0.48	+0.4
49,541	+		GFF6552	0.48	+0.5
49,541	+		GFF6552	0.48	-1.6
49,542	-		GFF6552	0.48	-1.8
49,542	-		GFF6552	0.48	-0.4
49,542	-		GFF6552	0.48	-2.8
49,542	-		GFF6552	0.48	-0.7
49,542	-		GFF6552	0.48	-0.0
49,542	-		GFF6552	0.48	-0.0
49,583	+		GFF6552	0.55	-0.3
49,583	+		GFF6552	0.55	+1.1
49,584	-		GFF6552	0.55	-0.5
49,584	-		GFF6552	0.55	-0.0
49,584	-		GFF6552	0.55	-0.2
49,584	-		GFF6552	0.55	-0.5
49,682	+		GFF6552	0.72	+0.3
49,682	+		GFF6552	0.72	-0.2
49,682	+		GFF6552	0.72	-0.5
49,682	+		GFF6552	0.72	-0.4
49,682	+		GFF6552	0.72	+0.2
49,682	+		GFF6552	0.72	-0.0
49,682	+		GFF6552	0.72	-0.9
49,682	+		GFF6552	0.72	+0.4
49,682	+		GFF6552	0.72	-0.5
49,682	+		GFF6552	0.72	-0.9
49,682	+		GFF6552	0.72	+1.4
49,683	-		GFF6552	0.72	-0.4
49,683	-		GFF6552	0.72	-0.0
49,683	-		GFF6552	0.72	+0.4
49,683	-		GFF6552	0.72	-0.0
49,683	-		GFF6552	0.72	-0.5
49,683	-		GFF6552	0.72	-0.2
49,683	-		GFF6552	0.72	+0.3
49,683	-		GFF6552	0.72	-0.6
49,683	-		GFF6552	0.72	-0.2
49,683	-		GFF6552	0.72	-0.4
49,761	+		GFF6552	0.85	+0.2
49,762	-		GFF6552	0.86	+2.1
49,762	-		GFF6552	0.86	-0.3
49,762	-		GFF6552	0.86	-0.2
49,762	-		GFF6552	0.86	+0.1
49,762	-		GFF6552	0.86	+0.5
49,916	+				-0.4
49,916	+				+1.0
49,916	+				-0.2
49,916	+				-0.5
49,916	+				-0.9
49,916	+				-0.0
49,917	-				-0.2
49,917	-				-1.4
49,917	-				+0.3
49,917	-				-0.5
49,917	-				-0.3
49,917	-				+0.4
49,917	-				-1.6
49,917	-				+0.0
49,917	-				-0.1
49,917	-				+0.1
49,959	+				-0.7
50,015	+				-0.2
50,015	+				-0.2
50,047	+				-0.4
50,071	+				-0.6
50,071	+				-0.2
50,071	+				-0.1
50,071	+				-0.6
50,071	+				+0.1
50,071	+				-0.3
50,071	+				+0.5
50,072	-				+0.2
50,072	-				+0.5
50,072	-				+0.3
50,072	-				-1.0
50,138	+				+1.5
50,138	+				+0.1
50,138	+				+0.6
50,138	+				+1.0
50,138	+				-2.0
50,138	+				-0.2
50,138	+				-0.4
50,138	+				+0.5
50,138	+				+0.3
50,138	+				-0.5
50,138	+				-0.6
50,139	-				-1.0
50,139	-				-1.0
50,139	-				+0.6
50,139	-				-0.9
50,160	-				+1.5
50,170	+				-0.9
50,170	+				+0.2
50,171	-				-0.1
50,171	-				+0.0
50,171	-				-0.2
50,865	+		GFF6553	0.86	+0.3
50,865	+		GFF6553	0.86	+1.4
51,124	+		GFF6554	0.29	+0.0
51,125	-		GFF6554	0.29	-0.2
51,167	-		GFF6554	0.37	+2.4
51,286	+		GFF6554	0.60	-0.2
51,286	+		GFF6554	0.60	+0.6
51,531	+				+0.1
51,866	+		GFF6555	0.89	-0.6