Strain Fitness in Variovorax sp. SCN45 around GFF6520

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
14,732	+		GFF6519	0.40	-0.3
14,733	-		GFF6519	0.40	+0.1
15,087	+				-0.1
15,087	+				-0.3
15,087	+				+0.2
15,087	+				-0.8
15,087	+				-0.8
15,087	+				+0.7
15,088	-				+0.3
15,088	-				-0.1
15,088	-				-0.1
15,088	-				-0.0
15,088	-				-0.6
15,088	-				-0.1
15,088	-				+0.4
15,088	-				-0.0
15,088	-				+0.2
15,088	-				+1.0
15,088	-				+0.7
15,088	-				-1.0
16,397	-		GFF6521	0.64	+0.1
16,441	+		GFF6521	0.69	-0.2
16,441	+		GFF6521	0.69	+0.1
16,441	+		GFF6521	0.69	+0.2
16,441	+		GFF6521	0.69	-1.8
16,441	+		GFF6521	0.69	-0.3
16,441	+		GFF6521	0.69	+0.7
16,442	-		GFF6521	0.69	-0.5
16,442	-		GFF6521	0.69	+0.2
16,442	-		GFF6521	0.69	+0.5
16,442	-		GFF6521	0.69	-0.1
16,442	-		GFF6521	0.69	-0.9
16,442	-		GFF6521	0.69	-0.2
16,531	+		GFF6521	0.78	+0.6
16,531	+		GFF6521	0.78	-0.6
16,531	+		GFF6521	0.78	-1.2
16,532	-		GFF6521	0.79	-1.4
16,678	+				-2.8
16,678	+				+0.1
16,678	+				-2.3
16,679	-				+1.0
16,698	+				-1.0
16,698	+				-0.2
16,698	+				+0.1
16,699	-				-1.2
16,699	-				-0.9
16,699	-				-0.2
16,699	-				-0.2