Strain Fitness in Variovorax sp. SCN45 around GFF6291

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
80,360	+		GFF6290	0.50	-0.7
80,360	+		GFF6290	0.50	-1.3
80,360	+		GFF6290	0.50	-0.5
80,360	+		GFF6290	0.50	+0.0
80,360	+		GFF6290	0.50	-0.7
80,360	+		GFF6290	0.50	-0.6
80,360	+		GFF6290	0.50	-0.7
80,360	+		GFF6290	0.50	+0.7
80,360	+		GFF6290	0.50	-2.0
80,360	+		GFF6290	0.50	-1.4
80,360	+		GFF6290	0.50	+0.8
80,360	+		GFF6290	0.50	+0.1
80,360	+		GFF6290	0.50	+0.2
80,361	-		GFF6290	0.50	-1.2
80,361	-		GFF6290	0.50	-1.2
80,361	-		GFF6290	0.50	+0.3
80,361	-		GFF6290	0.50	-0.4
80,361	-		GFF6290	0.50	-1.2
80,361	-		GFF6290	0.50	-0.9
80,361	-		GFF6290	0.50	-0.1
80,361	-		GFF6290	0.50	-0.9
80,361	-		GFF6290	0.50	-1.3
80,361	-		GFF6290	0.50	-0.2
80,361	-		GFF6290	0.50	-0.4
80,361	-		GFF6290	0.50	-2.3
80,582	+		GFF6290	0.64	-1.6
80,582	+		GFF6290	0.64	-3.0
80,583	-		GFF6290	0.64	-0.4
80,583	-		GFF6290	0.64	-1.7
80,583	-		GFF6290	0.64	-1.5
80,871	+		GFF6290	0.82	+0.7
80,871	+		GFF6290	0.82	-0.9
80,871	+		GFF6290	0.82	-1.7
80,871	+		GFF6290	0.82	-0.5
80,871	+		GFF6290	0.82	+0.1
80,872	-		GFF6290	0.82	-0.7
80,872	-		GFF6290	0.82	-1.7
80,872	-		GFF6290	0.82	-0.0
80,872	-		GFF6290	0.82	-1.6
81,178	+				+0.1
81,178	+				-0.1
81,178	+				-0.6
81,178	+				+0.4
81,178	+				+0.5
81,178	+				-0.3
81,178	+				+0.5
81,178	+				-1.3
81,178	+				-0.3
81,178	+				-1.5
81,178	+				-0.0
81,178	+				-0.3
81,178	+				+0.1
81,178	+				-0.9
81,178	+				+0.1
81,178	+				-1.0
81,178	+				-0.2
81,178	+				+0.9
81,179	-				-1.9
81,179	-				-0.4
81,179	-				+0.2
81,179	-				+0.4
81,179	-				-0.4
81,179	-				-0.7
81,179	-				-0.4
81,179	-				-0.6
81,179	-				+0.1
81,179	-				+0.6
81,179	-				-0.1
81,179	-				-0.1
81,179	-				-0.4
81,179	-				-0.2
81,179	-				+0.3
81,179	-				-0.2
81,179	-				-0.8
81,179	-				-0.4
81,179	-				-0.3
81,179	-				-1.9
81,179	-				+0.4
81,179	-				-0.5
81,179	-				+1.5
81,179	-				-0.3
81,179	-				+0.1
81,179	-				+0.4
81,984	-				-0.6
82,678	+				+0.1
82,678	+				-0.1
82,678	+				+0.5
82,678	+				+0.7
82,678	+				-0.3
82,679	-				+0.7
82,679	-				-0.3
82,679	-				-0.4
82,679	-				-1.5
82,679	-				+0.3
82,679	-				-1.1
82,705	+				+1.4
82,705	+				+1.1
82,705	+				-0.2
82,705	+				-0.8
82,705	+				-0.6
82,705	+				+0.1
82,705	+				+0.5
82,705	+				+0.4
82,705	+				+0.0
82,705	+				+0.1
82,705	+				+0.1
82,705	+				+0.2
82,705	+				+0.3
82,705	+				-0.1
82,705	+				-1.3
82,706	-				-0.1
82,706	-				-0.8
82,706	-				-0.1
82,706	-				-1.2
82,706	-				-0.5
82,706	-				+0.3
82,706	-				+2.1
82,706	-				-0.0
82,706	-				-0.9
82,706	-				-0.3
82,706	-				-0.7
82,706	-				-0.4
82,706	-				+0.7
82,706	-				-0.1
82,706	-				-0.3
82,706	-				-0.5
82,706	-				+0.1
82,832	+				+1.0
82,832	+				+0.4
82,832	+				+1.7
82,832	+				-0.6
82,832	+				+0.1
82,832	+				-1.5
82,832	+				-1.9
82,832	+				-0.9
82,832	+				+0.1
82,832	+				-1.7
82,833	-				+1.3
82,833	-				+1.1
82,833	-				-0.7
82,833	-				+0.7
82,833	-				+0.1
82,833	-				+0.1
82,833	-				+0.1
82,886	+		GFF6293	0.13	-1.1
82,886	+		GFF6293	0.13	-0.6
82,886	+		GFF6293	0.13	-1.7
82,887	-		GFF6293	0.13	+1.1
82,887	-		GFF6293	0.13	+0.0
82,887	-		GFF6293	0.13	-0.3
82,887	-		GFF6293	0.13	+0.4
82,931	+		GFF6293	0.20	+2.1
82,931	+		GFF6293	0.20	+1.3
82,931	+		GFF6293	0.20	+0.1
82,932	-		GFF6293	0.20	+1.1
82,932	-		GFF6293	0.20	+0.1