Strain Fitness in Variovorax sp. SCN45 around GFF6215

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
121,420	+		GFF6214	0.31	-1.3
121,421	-		GFF6214	0.31	+1.5
121,421	-		GFF6214	0.31	+0.2
121,421	-		GFF6214	0.31	+1.5
121,421	-		GFF6214	0.31	-0.4
121,421	-		GFF6214	0.31	-0.8
121,421	-		GFF6214	0.31	+0.4
121,421	-		GFF6214	0.31	-0.2
121,429	+		GFF6214	0.32	+0.9
121,429	+		GFF6214	0.32	-0.8
121,429	+		GFF6214	0.32	+0.3
121,429	+		GFF6214	0.32	-0.1
121,429	+		GFF6214	0.32	+0.0
121,429	+		GFF6214	0.32	-0.8
121,430	-		GFF6214	0.32	-1.0
121,430	-		GFF6214	0.32	+0.0
121,430	-		GFF6214	0.32	+0.4
121,430	-		GFF6214	0.32	-0.5
121,430	-		GFF6214	0.32	-1.3
121,430	-		GFF6214	0.32	+0.3
121,430	-		GFF6214	0.32	-1.2
121,489	+		GFF6214	0.38	+0.1
121,489	+		GFF6214	0.38	+1.2
121,490	-		GFF6214	0.38	+0.0
121,490	-		GFF6214	0.38	+0.2
121,490	-		GFF6214	0.38	+0.3
121,513	+		GFF6214	0.40	-0.3
121,514	-		GFF6214	0.40	+0.1
121,591	+		GFF6214	0.48	-0.3
121,591	+		GFF6214	0.48	-0.5
121,592	-		GFF6214	0.49	+0.7
121,592	-		GFF6214	0.49	+0.5
121,592	-		GFF6214	0.49	+0.5
121,593	+		GFF6214	0.49	-0.3
121,593	+		GFF6214	0.49	-0.0
121,593	+		GFF6214	0.49	+0.1
121,593	+		GFF6214	0.49	-0.8
121,702	+		GFF6214	0.60	+0.3
121,702	+		GFF6214	0.60	+1.5
121,703	-		GFF6214	0.60	-0.8
121,703	-		GFF6214	0.60	-1.8
121,703	-		GFF6214	0.60	-0.7
121,703	-		GFF6214	0.60	-0.2
121,703	-		GFF6214	0.60	+0.5
121,703	-		GFF6214	0.60	+0.5
121,703	-		GFF6214	0.60	+3.1
121,703	-		GFF6214	0.60	+0.5
121,703	-		GFF6214	0.60	+0.8
121,703	-		GFF6214	0.60	-0.5
121,703	-		GFF6214	0.60	-0.8
121,703	-		GFF6214	0.60	-0.9
121,871	+		GFF6214	0.78	-0.3
121,871	+		GFF6214	0.78	+0.4
121,871	+		GFF6214	0.78	-0.3
121,872	-		GFF6214	0.78	-0.2
121,872	-		GFF6214	0.78	+2.2
121,872	-		GFF6214	0.78	+0.2
122,263	+		GFF6215	0.17	-0.1
122,536	-		GFF6215	0.54	+0.7
122,536	-		GFF6215	0.54	-0.1
122,536	-		GFF6215	0.54	-0.4
122,551	+		GFF6215	0.56	-0.7
122,551	+		GFF6215	0.56	-0.5
122,552	-		GFF6215	0.56	-1.4
122,552	-		GFF6215	0.56	-0.3
122,552	-		GFF6215	0.56	-0.4
122,552	-		GFF6215	0.56	+0.7
122,552	-		GFF6215	0.56	+1.3
122,552	-		GFF6215	0.56	+0.2
122,552	-		GFF6215	0.56	-1.0
122,552	-		GFF6215	0.56	+0.5
122,722	+		GFF6215	0.79	-0.5
122,722	+		GFF6215	0.79	-1.2
122,722	+		GFF6215	0.79	-1.2
122,723	-		GFF6215	0.79	-0.7
122,723	-		GFF6215	0.79	-0.6
122,723	-		GFF6215	0.79	+0.2
122,723	-		GFF6215	0.79	-0.4
122,731	+		GFF6215	0.80	-0.5
122,788	+		GFF6215	0.88	-0.6
122,788	+		GFF6215	0.88	-1.1
122,788	+		GFF6215	0.88	+0.9
122,788	+		GFF6215	0.88	+0.1
122,788	+		GFF6215	0.88	-1.6
122,788	+		GFF6215	0.88	-0.5
122,789	-		GFF6215	0.88	-0.4
122,789	-		GFF6215	0.88	-0.8
122,789	-		GFF6215	0.88	-0.8
122,789	-		GFF6215	0.88	+0.8
122,789	-		GFF6215	0.88	-0.5
122,789	-		GFF6215	0.88	+1.5
122,789	-		GFF6215	0.88	-0.5
122,789	-		GFF6215	0.88	-0.5
122,789	-		GFF6215	0.88	+0.3
122,790	+		GFF6215	0.89	-1.1
122,791	-		GFF6215	0.89	+0.5
122,791	-		GFF6215	0.89	-0.9
122,791	-		GFF6215	0.89	+0.6
122,791	-		GFF6215	0.89	-0.9
122,791	-		GFF6215	0.89	-0.2
122,830	+				-0.5
122,830	+				-0.2
122,831	-				+0.6
122,838	+				+0.5
122,839	-				+0.2
122,839	-				-0.6
122,864	+				-0.3
122,865	-				+1.2
122,865	-				-0.0
122,880	+				-0.1
122,881	-				-0.6
122,881	-				+1.0
122,881	-				+0.2
122,881	-				-0.4
122,881	-				-0.3
122,881	-				+0.9
122,881	-				+0.4
122,881	-				-0.3
122,881	-				-0.5
122,954	+				+0.7
122,954	+				-0.2
122,954	+				+1.2
122,954	+				-0.3
122,954	+				-0.5
122,962	-				+0.2
123,101	+				+0.0
123,122	-				-0.3
123,122	-				+0.0
123,125	+				-0.3
123,126	-				+0.2
123,126	-				-0.2
123,126	-				+0.5
123,126	-				-0.1
123,126	-				+0.6
123,145	+		GFF6216	0.11	-0.5
123,146	-		GFF6216	0.11	-0.1
123,146	-		GFF6216	0.11	-0.1
123,146	-		GFF6216	0.11	+0.3
123,164	+		GFF6216	0.12	-1.2
123,164	+		GFF6216	0.12	+1.3
123,165	-		GFF6216	0.12	-0.3
123,165	-		GFF6216	0.12	-0.7
123,175	+		GFF6216	0.13	+0.6
123,176	-		GFF6216	0.13	-0.3
123,176	-		GFF6216	0.13	-0.7
123,240	+		GFF6216	0.16	+0.4
123,240	+		GFF6216	0.16	+0.1
123,240	+		GFF6216	0.16	-0.9
123,240	+		GFF6216	0.16	-0.8
123,241	-		GFF6216	0.16	-0.6
123,272	+		GFF6216	0.18	+0.3
123,273	-		GFF6216	0.18	+0.0
123,281	+		GFF6216	0.18	-0.5
123,401	+		GFF6216	0.24	+0.6
123,402	-		GFF6216	0.24	+0.5
123,509	-		GFF6216	0.30	-0.1
123,535	+		GFF6216	0.31	-0.3
123,535	+		GFF6216	0.31	-0.2
123,536	-		GFF6216	0.31	-0.5
123,536	-		GFF6216	0.31	-0.7
123,536	-		GFF6216	0.31	-0.2
123,536	-		GFF6216	0.31	-0.4
123,536	-		GFF6216	0.31	-1.2
123,583	-		GFF6216	0.34	-0.4
123,583	-		GFF6216	0.34	+0.2
123,584	+		GFF6216	0.34	-0.1
123,584	+		GFF6216	0.34	+0.1
123,585	-		GFF6216	0.34	+0.1
123,585	-		GFF6216	0.34	-0.2
123,585	-		GFF6216	0.34	-1.8
123,618	+		GFF6216	0.35	-0.3
123,635	+		GFF6216	0.36	+1.1
123,635	+		GFF6216	0.36	-1.3
123,636	-		GFF6216	0.36	-1.2
123,671	+		GFF6216	0.38	-0.3
123,671	+		GFF6216	0.38	-0.8
123,671	+		GFF6216	0.38	-0.3
123,671	+		GFF6216	0.38	-1.5
123,672	-		GFF6216	0.38	-0.0
123,672	-		GFF6216	0.38	+0.5
123,749	+		GFF6216	0.42	+0.2
123,758	+		GFF6216	0.43	-0.8
123,785	+		GFF6216	0.44	-1.1
123,785	+		GFF6216	0.44	-1.3
123,785	+		GFF6216	0.44	-1.2
123,786	-		GFF6216	0.44	-1.1
123,786	-		GFF6216	0.44	+0.0
123,786	-		GFF6216	0.44	+0.7
123,786	-		GFF6216	0.44	-0.1
123,818	-		GFF6216	0.46	+0.1
123,866	+		GFF6216	0.48	-0.3
123,867	-		GFF6216	0.48	-0.2
123,867	-		GFF6216	0.48	-0.0