Strain Fitness in Variovorax sp. SCN45 around GFF6068

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6067 and GFF6068 are separated by 15 nucleotidesGFF6068 and GFF6069 are separated by 32 nucleotides GFF6067 - Permease of the drug/metabolite transporter (DMT) superfamily, at 128,811 to 129,719 GFF6067 GFF6068 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 129,735 to 130,526 GFF6068 GFF6069 - Permease of the drug/metabolite transporter (DMT) superfamily, at 130,559 to 131,515 GFF6069 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2at 128.798 kb on - strandat 129.033 kb on + strand, within GFF6067at 129.033 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.066 kb on + strand, within GFF6067at 129.067 kb on - strand, within GFF6067at 129.067 kb on - strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.297 kb on + strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.298 kb on - strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.330 kb on + strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.331 kb on - strand, within GFF6067at 129.538 kb on - strand, within GFF6067at 129.538 kb on - strand, within GFF6067at 129.660 kb on + strandat 129.660 kb on + strandat 129.660 kb on + strandat 129.739 kb on + strandat 129.739 kb on + strandat 129.739 kb on + strandat 129.739 kb on + strandat 129.739 kb on + strandat 129.740 kb on - strandat 129.740 kb on - strandat 129.740 kb on - strandat 129.790 kb on + strandat 129.790 kb on + strandat 129.790 kb on + strandat 129.791 kb on - strandat 129.791 kb on - strandat 130.465 kb on + strandat 130.514 kb on + strandat 130.514 kb on + strandat 130.515 kb on - strandat 130.646 kb on + strandat 130.647 kb on - strandat 130.930 kb on - strand, within GFF6069at 130.930 kb on - strand, within GFF6069at 130.938 kb on + strand, within GFF6069at 130.938 kb on + strand, within GFF6069at 130.938 kb on + strand, within GFF6069at 130.939 kb on - strand, within GFF6069at 130.939 kb on - strand, within GFF6069at 130.947 kb on + strand, within GFF6069at 130.947 kb on + strand, within GFF6069at 130.947 kb on + strand, within GFF6069at 130.947 kb on + strand, within GFF6069at 130.948 kb on - strand, within GFF6069at 130.948 kb on - strand, within GFF6069at 130.948 kb on - strand, within GFF6069at 131.058 kb on + strand, within GFF6069at 131.058 kb on + strand, within GFF6069at 131.058 kb on + strand, within GFF6069at 131.059 kb on - strand, within GFF6069at 131.059 kb on - strand, within GFF6069at 131.059 kb on - strand, within GFF6069at 131.059 kb on - strand, within GFF6069at 131.059 kb on - strand, within GFF6069at 131.059 kb on - strand, within GFF6069at 131.106 kb on + strand, within GFF6069at 131.148 kb on + strand, within GFF6069at 131.181 kb on + strand, within GFF6069at 131.181 kb on + strand, within GFF6069at 131.181 kb on + strand, within GFF6069at 131.182 kb on - strand, within GFF6069at 131.182 kb on - strand, within GFF6069at 131.217 kb on + strand, within GFF6069at 131.218 kb on - strand, within GFF6069at 131.218 kb on - strand, within GFF6069at 131.220 kb on + strand, within GFF6069at 131.220 kb on + strand, within GFF6069at 131.221 kb on - strand, within GFF6069at 131.221 kb on - strand, within GFF6069at 131.373 kb on + strand, within GFF6069

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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128,798 - -1.2
129,033 + GFF6067 0.24 -0.6
129,033 + GFF6067 0.24 +0.1
129,066 + GFF6067 0.28 -1.2
129,066 + GFF6067 0.28 -0.3
129,066 + GFF6067 0.28 +0.4
129,067 - GFF6067 0.28 -0.1
129,067 - GFF6067 0.28 -2.7
129,297 + GFF6067 0.53 +0.4
129,297 + GFF6067 0.53 -0.3
129,297 + GFF6067 0.53 -0.7
129,297 + GFF6067 0.53 -0.4
129,297 + GFF6067 0.53 -0.3
129,297 + GFF6067 0.53 -0.4
129,298 - GFF6067 0.54 -0.1
129,298 - GFF6067 0.54 -0.1
129,298 - GFF6067 0.54 +0.7
129,298 - GFF6067 0.54 -0.7
129,298 - GFF6067 0.54 -0.2
129,298 - GFF6067 0.54 +0.1
129,298 - GFF6067 0.54 -1.3
129,298 - GFF6067 0.54 -1.2
129,298 - GFF6067 0.54 +0.2
129,298 - GFF6067 0.54 +0.4
129,330 + GFF6067 0.57 +2.3
129,330 + GFF6067 0.57 +0.5
129,330 + GFF6067 0.57 -0.6
129,330 + GFF6067 0.57 -0.3
129,331 - GFF6067 0.57 -0.3
129,331 - GFF6067 0.57 -0.1
129,331 - GFF6067 0.57 +0.4
129,331 - GFF6067 0.57 -2.0
129,331 - GFF6067 0.57 +0.3
129,331 - GFF6067 0.57 +1.8
129,331 - GFF6067 0.57 +0.7
129,331 - GFF6067 0.57 -0.7
129,538 - GFF6067 0.80 +0.8
129,538 - GFF6067 0.80 -0.1
129,660 + -1.4
129,660 + -0.3
129,660 + -0.4
129,739 + -1.0
129,739 + -1.0
129,739 + -0.1
129,739 + +0.5
129,739 + -0.0
129,740 - +0.3
129,740 - -0.0
129,740 - -0.2
129,790 + +2.0
129,790 + -0.3
129,790 + -0.0
129,791 - +0.3
129,791 - -0.2
130,465 + -0.3
130,514 + +0.7
130,514 + -0.2
130,515 - +0.1
130,646 + +0.1
130,647 - -0.6
130,930 - GFF6069 0.39 -1.9
130,930 - GFF6069 0.39 -0.5
130,938 + GFF6069 0.40 +0.1
130,938 + GFF6069 0.40 -0.7
130,938 + GFF6069 0.40 +0.2
130,939 - GFF6069 0.40 -0.6
130,939 - GFF6069 0.40 -0.0
130,947 + GFF6069 0.41 +0.2
130,947 + GFF6069 0.41 -0.2
130,947 + GFF6069 0.41 -0.4
130,947 + GFF6069 0.41 +0.9
130,948 - GFF6069 0.41 -0.7
130,948 - GFF6069 0.41 -2.1
130,948 - GFF6069 0.41 +0.4
131,058 + GFF6069 0.52 -0.3
131,058 + GFF6069 0.52 +0.9
131,058 + GFF6069 0.52 -0.8
131,059 - GFF6069 0.52 -0.5
131,059 - GFF6069 0.52 -1.0
131,059 - GFF6069 0.52 -0.3
131,059 - GFF6069 0.52 +0.9
131,059 - GFF6069 0.52 -0.6
131,059 - GFF6069 0.52 -0.6
131,106 + GFF6069 0.57 -0.1
131,148 + GFF6069 0.62 -0.7
131,181 + GFF6069 0.65 -0.6
131,181 + GFF6069 0.65 -0.2
131,181 + GFF6069 0.65 +2.6
131,182 - GFF6069 0.65 -0.3
131,182 - GFF6069 0.65 -0.4
131,217 + GFF6069 0.69 +0.4
131,218 - GFF6069 0.69 +0.2
131,218 - GFF6069 0.69 +0.9
131,220 + GFF6069 0.69 -0.2
131,220 + GFF6069 0.69 -0.0
131,221 - GFF6069 0.69 -0.0
131,221 - GFF6069 0.69 -0.7
131,373 + GFF6069 0.85 -0.6

Or see this region's nucleotide sequence