Strain Fitness in Variovorax sp. SCN45 around GFF5961

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
15,717	-		GFF5959	0.75	-0.8
15,717	-		GFF5959	0.75	-1.2
16,104	+				+0.3
16,271	-		GFF5960	0.27	-0.5
16,271	-		GFF5960	0.27	-1.3
16,392	+		GFF5960	0.47	-1.7
16,392	+		GFF5960	0.47	+0.2
16,462	+		GFF5960	0.58	+0.8
16,463	-		GFF5960	0.58	+0.1
16,803	+		GFF5961	0.18	+0.4
16,803	+		GFF5961	0.18	-0.4
16,803	+		GFF5961	0.18	-0.3
16,803	+		GFF5961	0.18	+1.7
16,804	-		GFF5961	0.18	+0.2
16,804	-		GFF5961	0.18	-0.2
16,804	-		GFF5961	0.18	+0.5
16,804	-		GFF5961	0.18	-0.3
17,113	-		GFF5961	0.80	+0.6
17,270	+				-0.3
17,271	-				+0.2
17,271	-				-0.7
17,561	-				-0.4
17,561	-				-0.8
17,622	+				+0.4
17,622	+				-0.7
17,622	+				+1.3
17,622	+				+0.6
17,622	+				-0.0
17,622	+				-0.4
17,622	+				-0.3
17,622	+				-0.2
17,623	-				+0.6
17,623	-				-0.3
17,623	-				+0.3
17,817	+		GFF5963	0.51	-0.6
17,817	+		GFF5963	0.51	-0.4
17,817	+		GFF5963	0.51	-1.2
17,817	+		GFF5963	0.51	-0.2
17,817	+		GFF5963	0.51	+0.8
17,818	-		GFF5963	0.52	+0.2
17,818	-		GFF5963	0.52	-1.3
17,818	-		GFF5963	0.52	-1.0
17,818	-		GFF5963	0.52	+0.9
17,818	-		GFF5963	0.52	-0.3
17,818	-		GFF5963	0.52	+0.6
18,151	+		GFF5964	0.14	+0.2
18,151	+		GFF5964	0.14	-0.9
18,151	+		GFF5964	0.14	+0.0
18,151	+		GFF5964	0.14	+0.1
18,151	+		GFF5964	0.14	-0.4
18,151	+		GFF5964	0.14	-0.3