Strain Fitness in Variovorax sp. SCN45 around GFF5932

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5930 and GFF5931 are separated by 15 nucleotidesGFF5931 and GFF5932 are separated by 13 nucleotidesGFF5932 and GFF5933 are separated by 13 nucleotides GFF5930 - VgrG protein, at 144,876 to 147,254 GFF5930 GFF5931 - FIG01219766: hypothetical protein, at 147,270 to 147,665 GFF5931 GFF5932 - no description, at 147,679 to 148,311 GFF5932 GFF5933 - Pentapeptide repeat family protein, at 148,325 to 149,380 GFF5933 Position (kb) 147 148 149Strain fitness (log2 ratio) -1 0 1at 146.737 kb on + strand, within GFF5930at 146.737 kb on + strand, within GFF5930at 146.738 kb on - strand, within GFF5930at 146.738 kb on - strand, within GFF5930at 146.986 kb on + strand, within GFF5930

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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146,737 + GFF5930 0.78 +0.2
146,737 + GFF5930 0.78 -0.1
146,738 - GFF5930 0.78 +0.1
146,738 - GFF5930 0.78 +0.3
146,986 + GFF5930 0.89 -0.2

Or see this region's nucleotide sequence