Strain Fitness in Variovorax sp. SCN45 around GFF5885

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5883 and GFF5884 are separated by 246 nucleotidesGFF5884 and GFF5885 are separated by 0 nucleotidesGFF5885 and GFF5886 are separated by 144 nucleotidesGFF5886 and GFF5887 are separated by 0 nucleotides GFF5883 - LSU ribosomal protein L10p (P0), at 103,889 to 104,428 GFF5883 GFF5884 - LSU ribosomal protein L1p (L10Ae), at 104,675 to 105,373 GFF5884 GFF5885 - LSU ribosomal protein L11p (L12e), at 105,374 to 105,805 GFF5885 GFF5886 - Transcription antitermination protein NusG, at 105,950 to 106,561 GFF5886 GFF5887 - Protein translocase subunit SecE, at 106,562 to 106,945 GFF5887 Position (kb) 105 106Strain fitness (log2 ratio) -2 -1 0 1at 104.571 kb on - strandat 104.571 kb on - strandat 104.571 kb on - strandat 104.571 kb on - strandat 104.677 kb on - strandat 104.677 kb on - strandat 104.677 kb on - strandat 104.677 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
104,571 - +0.7
104,571 - -0.1
104,571 - -0.8
104,571 - +0.4
104,677 - -2.1
104,677 - +0.2
104,677 - -0.3
104,677 - +0.2

Or see this region's nucleotide sequence