Strain Fitness in Variovorax sp. SCN45 around GFF5846

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
22,409	+				+0.2
22,409	-				+1.5
22,545	+		GFF5845	0.14	+0.3
22,545	+		GFF5845	0.14	-0.2
22,545	+		GFF5845	0.14	+1.1
22,545	+		GFF5845	0.14	-0.4
22,545	+		GFF5845	0.14	+1.0
22,545	+		GFF5845	0.14	-0.1
22,546	-		GFF5845	0.14	+0.0
22,546	-		GFF5845	0.14	-0.1
22,546	-		GFF5845	0.14	+0.9
22,693	-		GFF5845	0.31	+0.2
22,693	-		GFF5845	0.31	+1.3
23,073	+		GFF5845	0.76	-0.4
23,073	+		GFF5845	0.76	-1.0
23,074	-		GFF5845	0.76	+0.7
23,074	-		GFF5845	0.76	-1.4
23,074	-		GFF5845	0.76	+1.7
23,074	-		GFF5845	0.76	-0.5
23,074	-		GFF5845	0.76	-0.6
23,145	+		GFF5845	0.84	-0.6
23,145	+		GFF5845	0.84	+0.3
23,145	+		GFF5845	0.84	+0.0
23,145	+		GFF5845	0.84	-0.9
23,145	+		GFF5845	0.84	+0.0
23,146	-		GFF5845	0.84	-0.5
23,146	-		GFF5845	0.84	-0.2
23,146	-		GFF5845	0.84	+0.3
23,146	-		GFF5845	0.84	-0.7
23,146	-		GFF5845	0.84	+0.4
23,340	+				-0.9
23,340	+				+0.1
23,340	+				+1.7
23,341	-				+0.2
23,348	+				+0.6
23,349	-				-0.4
24,160	+				+0.0
24,161	-				+0.1
24,214	+				-1.6
24,215	-				-0.2
24,409	+		GFF5847	0.12	-0.4
24,409	+		GFF5847	0.12	+0.7
24,409	+		GFF5847	0.12	+0.9
24,410	-		GFF5847	0.12	+0.1
24,410	-		GFF5847	0.12	-0.6
24,410	-		GFF5847	0.12	-0.8
24,871	+		GFF5847	0.29	-0.7
24,872	-		GFF5847	0.29	-0.1
24,872	-		GFF5847	0.29	+0.4
24,872	-		GFF5847	0.29	-0.2
24,872	-		GFF5847	0.29	+0.1