Strain Fitness in Variovorax sp. SCN45 around GFF5837

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
12,861	+		GFF5836	0.25	-1.3
12,861	+		GFF5836	0.25	-0.7
12,861	+		GFF5836	0.25	-0.9
12,861	+		GFF5836	0.25	-0.6
12,861	+		GFF5836	0.25	+0.0
12,862	-		GFF5836	0.25	+0.2
12,862	-		GFF5836	0.25	-2.0
12,862	-		GFF5836	0.25	-0.3
12,862	-		GFF5836	0.25	-0.1
12,862	-		GFF5836	0.25	+0.2
12,862	-		GFF5836	0.25	-0.0
12,862	-		GFF5836	0.25	-1.0
12,862	-		GFF5836	0.25	-1.5
12,874	+		GFF5836	0.30	-0.8
12,874	+		GFF5836	0.30	+0.3
12,874	+		GFF5836	0.30	-0.7
12,874	+		GFF5836	0.30	+0.2
12,874	+		GFF5836	0.30	+0.2
12,874	+		GFF5836	0.30	+0.8
12,874	+		GFF5836	0.30	-0.4
12,874	+		GFF5836	0.30	-0.3
12,874	+		GFF5836	0.30	+1.3
12,874	+		GFF5836	0.30	+1.2
12,874	+		GFF5836	0.30	+0.4
12,875	-		GFF5836	0.31	-2.3
12,875	-		GFF5836	0.31	-0.1
12,875	-		GFF5836	0.31	-0.5
12,875	-		GFF5836	0.31	+0.1
12,875	-		GFF5836	0.31	-0.1
12,875	-		GFF5836	0.31	-0.3
12,875	-		GFF5836	0.31	+1.3
12,875	-		GFF5836	0.31	+0.4
12,875	-		GFF5836	0.31	+0.7
12,875	-		GFF5836	0.31	-0.2
12,875	-		GFF5836	0.31	+0.3
12,875	-		GFF5836	0.31	-0.5
12,952	-		GFF5836	0.63	+0.3
12,966	+		GFF5836	0.69	-0.9
12,967	-		GFF5836	0.70	-0.3
12,969	-		GFF5836	0.70	-0.1
13,036	+				+0.0
13,036	+				+1.3
13,036	+				+0.7
13,036	+				-0.3
13,037	-				+0.5
13,062	-				+0.2
13,111	+				-0.3
13,111	+				-0.7
13,112	-				-1.1
13,112	-				+0.5
13,112	-				-0.2
15,630	+		GFF5838	0.28	-0.2
15,630	+		GFF5838	0.28	+1.7
15,630	+		GFF5838	0.28	+0.3
15,630	+		GFF5838	0.28	+0.6
15,630	+		GFF5838	0.28	-0.7
15,631	-		GFF5838	0.28	-0.7
15,822	+		GFF5838	0.49	-0.2
15,822	+		GFF5838	0.49	+0.3
15,822	+		GFF5838	0.49	-1.1
15,822	+		GFF5838	0.49	-0.1
15,822	+		GFF5838	0.49	-0.2
15,823	-		GFF5838	0.49	-0.2
15,823	-		GFF5838	0.49	+0.0
15,900	+		GFF5838	0.58	-1.9
15,900	+		GFF5838	0.58	-0.6
15,900	+		GFF5838	0.58	-0.4
15,900	+		GFF5838	0.58	-0.0
15,900	+		GFF5838	0.58	+0.2
15,960	+		GFF5838	0.64	-0.2
15,960	+		GFF5838	0.64	-0.5
15,960	+		GFF5838	0.64	+0.4
15,960	+		GFF5838	0.64	+0.2
15,960	+		GFF5838	0.64	+0.7
15,960	+		GFF5838	0.64	-1.8
15,960	+		GFF5838	0.64	-0.4
15,960	+		GFF5838	0.64	+0.8
15,960	+		GFF5838	0.64	-0.5
15,960	+		GFF5838	0.64	-0.4
15,960	+		GFF5838	0.64	-0.1
15,960	+		GFF5838	0.64	+1.5
15,960	+		GFF5838	0.64	-0.4
15,960	+		GFF5838	0.64	-0.0
15,960	+		GFF5838	0.64	+1.2
15,961	-		GFF5838	0.64	-1.7
15,961	-		GFF5838	0.64	-0.0
15,961	-		GFF5838	0.64	-1.4
15,961	-		GFF5838	0.64	+0.2
15,961	-		GFF5838	0.64	-0.1
15,961	-		GFF5838	0.64	+0.1
15,961	-		GFF5838	0.64	-0.3
15,961	-		GFF5838	0.64	-1.2
15,961	-		GFF5838	0.64	-1.3
15,961	-		GFF5838	0.64	-1.0
15,961	-		GFF5838	0.64	+1.2
15,961	-		GFF5838	0.64	+0.0
15,961	-		GFF5838	0.64	-0.6
15,961	-		GFF5838	0.64	-0.2
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	-0.6
15,961	-		GFF5838	0.64	+0.3
15,961	-		GFF5838	0.64	-0.8
15,961	-		GFF5838	0.64	-2.1
15,961	-		GFF5838	0.64	-0.6
15,961	-		GFF5838	0.64	+0.4
15,961	-		GFF5838	0.64	+0.7
15,961	-		GFF5838	0.64	+0.9
15,961	-		GFF5838	0.64	+1.7
15,961	-		GFF5838	0.64	-0.2
15,966	+		GFF5838	0.65	+0.4
15,966	+		GFF5838	0.65	+1.2
15,966	+		GFF5838	0.65	+0.2
15,966	+		GFF5838	0.65	-0.7
15,967	-		GFF5838	0.65	+0.7
15,967	-		GFF5838	0.65	-1.6
15,967	-		GFF5838	0.65	+0.1
15,967	-		GFF5838	0.65	-0.3
15,967	-		GFF5838	0.65	-0.4
15,967	-		GFF5838	0.65	-0.4
15,972	+		GFF5838	0.65	-0.2
16,005	+		GFF5838	0.69	-2.0
16,005	+		GFF5838	0.69	-1.8
16,005	+		GFF5838	0.69	-0.1
16,005	+		GFF5838	0.69	+0.3
16,005	-		GFF5838	0.69	-0.1
16,006	-		GFF5838	0.69	-0.8
16,006	-		GFF5838	0.69	-0.0
16,006	-		GFF5838	0.69	-0.2
16,006	-		GFF5838	0.69	+1.0
16,006	-		GFF5838	0.69	+0.2
16,006	-		GFF5838	0.69	-1.5
16,006	-		GFF5838	0.69	-0.3
16,006	-		GFF5838	0.69	-2.3
16,006	-		GFF5838	0.69	-0.5
16,006	-		GFF5838	0.69	-2.1
16,065	+		GFF5838	0.76	-0.3
16,065	+		GFF5838	0.76	-0.3
16,065	+		GFF5838	0.76	+0.3
16,065	+		GFF5838	0.76	-0.5
16,066	-		GFF5838	0.76	+0.2
16,066	-		GFF5838	0.76	-0.3
16,066	-		GFF5838	0.76	-0.1
16,110	+		GFF5838	0.81	-0.8
16,110	+		GFF5838	0.81	-0.7
16,111	-		GFF5838	0.81	+0.8
16,113	+		GFF5838	0.81	+0.8
16,113	+		GFF5838	0.81	+2.7
16,113	+		GFF5838	0.81	+0.1
16,114	-		GFF5838	0.81	+1.3
16,114	-		GFF5838	0.81	-0.2
16,114	-		GFF5838	0.81	-1.1
16,114	-		GFF5838	0.81	-0.1
16,131	+		GFF5838	0.83	-0.6
16,131	+		GFF5838	0.83	-0.6
16,131	+		GFF5838	0.83	-0.9
16,131	+		GFF5838	0.83	+0.5
16,132	-		GFF5838	0.83	-0.4
16,132	-		GFF5838	0.83	+1.5
16,132	-		GFF5838	0.83	-0.8
16,132	-		GFF5838	0.83	-0.1
16,132	-		GFF5838	0.83	+1.1
16,132	-		GFF5838	0.83	+0.6
16,132	-		GFF5838	0.83	+1.3
16,200	+				+0.2
16,201	-				+0.7
16,201	-				-0.2
16,201	-				+1.2
16,201	-				-1.1
16,201	-				+0.1
16,236	+				+0.6
16,236	+				+1.7
16,236	+				-0.4
16,237	-				-0.3
16,237	-				-0.7
16,237	-				+1.2
16,311	+				+0.7
16,312	-				-0.2
16,312	-				-0.4