Strain Fitness in Variovorax sp. SCN45 around GFF5835

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
10,828	+		GFF5834	0.56	+0.3
10,829	-		GFF5834	0.56	-0.0
10,829	-		GFF5834	0.56	-0.5
10,927	+		GFF5834	0.63	+0.1
10,927	+		GFF5834	0.63	-0.9
10,927	+		GFF5834	0.63	-1.1
10,927	+		GFF5834	0.63	+0.3
10,928	-		GFF5834	0.63	+0.4
10,928	-		GFF5834	0.63	-1.1
10,928	-		GFF5834	0.63	-0.0
10,928	-		GFF5834	0.63	-0.2
10,928	-		GFF5834	0.63	-0.4
10,975	+		GFF5834	0.66	+1.7
10,975	+		GFF5834	0.66	-0.7
10,975	+		GFF5834	0.66	+0.0
10,975	+		GFF5834	0.66	+0.3
10,976	-		GFF5834	0.66	+1.2
10,976	-		GFF5834	0.66	+1.2
10,976	-		GFF5834	0.66	-0.7
10,976	-		GFF5834	0.66	+1.0
11,020	+		GFF5834	0.68	-0.4
11,021	-		GFF5834	0.68	-0.8
11,219	-		GFF5834	0.81	-1.4
11,242	+		GFF5834	0.82	+0.3
11,242	+		GFF5834	0.82	-0.2
11,242	+		GFF5834	0.82	-0.8
11,242	+		GFF5834	0.82	-1.1
11,242	+		GFF5834	0.82	-0.1
11,243	-		GFF5834	0.82	-0.3
11,243	-		GFF5834	0.82	+0.7
11,243	-		GFF5834	0.82	-0.0
11,243	-		GFF5834	0.82	-0.0
11,243	-		GFF5834	0.82	-0.3
11,243	-		GFF5834	0.82	+0.2
11,243	-		GFF5834	0.82	+0.8
11,243	-		GFF5834	0.82	-0.3
11,339	-		GFF5834	0.88	-0.7
11,339	-		GFF5834	0.88	+0.3
11,339	-		GFF5834	0.88	-2.2
12,861	+		GFF5836	0.25	-1.3
12,861	+		GFF5836	0.25	-0.7
12,861	+		GFF5836	0.25	-0.9
12,861	+		GFF5836	0.25	-0.6
12,861	+		GFF5836	0.25	+0.0
12,862	-		GFF5836	0.25	+0.2
12,862	-		GFF5836	0.25	-2.0
12,862	-		GFF5836	0.25	-0.3
12,862	-		GFF5836	0.25	-0.1
12,862	-		GFF5836	0.25	+0.2
12,862	-		GFF5836	0.25	-0.0
12,862	-		GFF5836	0.25	-1.0
12,862	-		GFF5836	0.25	-1.5
12,874	+		GFF5836	0.30	-0.8
12,874	+		GFF5836	0.30	+0.3
12,874	+		GFF5836	0.30	-0.7
12,874	+		GFF5836	0.30	+0.2
12,874	+		GFF5836	0.30	+0.2
12,874	+		GFF5836	0.30	+0.8
12,874	+		GFF5836	0.30	-0.4
12,874	+		GFF5836	0.30	-0.3
12,874	+		GFF5836	0.30	+1.3
12,874	+		GFF5836	0.30	+1.2
12,874	+		GFF5836	0.30	+0.4
12,875	-		GFF5836	0.31	-2.3
12,875	-		GFF5836	0.31	-0.1
12,875	-		GFF5836	0.31	-0.5
12,875	-		GFF5836	0.31	+0.1
12,875	-		GFF5836	0.31	-0.1
12,875	-		GFF5836	0.31	-0.3
12,875	-		GFF5836	0.31	+1.3
12,875	-		GFF5836	0.31	+0.4
12,875	-		GFF5836	0.31	+0.7
12,875	-		GFF5836	0.31	-0.2
12,875	-		GFF5836	0.31	+0.3
12,875	-		GFF5836	0.31	-0.5
12,952	-		GFF5836	0.63	+0.3
12,966	+		GFF5836	0.69	-0.9
12,967	-		GFF5836	0.70	-0.3
12,969	-		GFF5836	0.70	-0.1
13,036	+				+0.0
13,036	+				+1.3
13,036	+				+0.7
13,036	+				-0.3
13,037	-				+0.5
13,062	-				+0.2
13,111	+				-0.3
13,111	+				-0.7
13,112	-				-1.1
13,112	-				+0.5
13,112	-				-0.2