Strain Fitness in Variovorax sp. SCN45 around GFF5826

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5824 and GFF5825 are separated by 20 nucleotidesGFF5825 and GFF5826 are separated by 10 nucleotidesGFF5826 and GFF5827 overlap by 4 nucleotides GFF5824 - no description, at 1,236 to 1,538 GFF5824 GFF5825 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 1,559 to 2,266 GFF5825 GFF5826 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 2,277 to 2,984 GFF5826 GFF5827 - FIG00452956: hypothetical protein, at 2,981 to 4,054 GFF5827 Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1at 1.536 kb on + strandat 1.537 kb on - strandat 1.537 kb on - strandat 1.575 kb on + strandat 1.575 kb on + strandat 1.589 kb on + strandat 1.589 kb on + strandat 1.590 kb on - strandat 1.590 kb on - strandat 1.656 kb on + strand, within GFF5825at 1.656 kb on + strand, within GFF5825at 1.657 kb on - strand, within GFF5825at 1.657 kb on - strand, within GFF5825at 1.657 kb on - strand, within GFF5825at 1.994 kb on + strand, within GFF5825at 1.994 kb on + strand, within GFF5825at 2.294 kb on - strandat 2.294 kb on - strandat 3.120 kb on + strand, within GFF5827at 3.121 kb on - strand, within GFF5827at 3.121 kb on - strand, within GFF5827at 3.201 kb on + strand, within GFF5827at 3.201 kb on + strand, within GFF5827at 3.201 kb on + strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.202 kb on - strand, within GFF5827at 3.489 kb on + strand, within GFF5827at 3.490 kb on - strand, within GFF5827at 3.490 kb on - strand, within GFF5827at 3.490 kb on - strand, within GFF5827at 3.645 kb on + strand, within GFF5827at 3.645 kb on + strand, within GFF5827at 3.645 kb on + strand, within GFF5827at 3.646 kb on - strand, within GFF5827at 3.646 kb on - strand, within GFF5827at 3.795 kb on + strand, within GFF5827at 3.795 kb on + strand, within GFF5827

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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1,536 + -0.3
1,537 - +0.1
1,537 - -1.1
1,575 + +0.0
1,575 + -0.7
1,589 + -0.4
1,589 + -0.4
1,590 - +0.4
1,590 - -0.5
1,656 + GFF5825 0.14 -1.1
1,656 + GFF5825 0.14 -0.4
1,657 - GFF5825 0.14 +0.4
1,657 - GFF5825 0.14 -0.4
1,657 - GFF5825 0.14 +0.5
1,994 + GFF5825 0.61 +0.2
1,994 + GFF5825 0.61 +0.7
2,294 - -1.1
2,294 - +0.5
3,120 + GFF5827 0.13 -0.4
3,121 - GFF5827 0.13 -0.4
3,121 - GFF5827 0.13 -2.3
3,201 + GFF5827 0.20 +0.1
3,201 + GFF5827 0.20 +0.5
3,201 + GFF5827 0.20 -1.1
3,202 - GFF5827 0.21 -0.7
3,202 - GFF5827 0.21 -0.3
3,202 - GFF5827 0.21 -0.3
3,202 - GFF5827 0.21 +0.1
3,202 - GFF5827 0.21 +0.3
3,202 - GFF5827 0.21 -0.0
3,489 + GFF5827 0.47 +0.5
3,490 - GFF5827 0.47 +0.3
3,490 - GFF5827 0.47 -0.1
3,490 - GFF5827 0.47 +0.5
3,645 + GFF5827 0.62 +0.4
3,645 + GFF5827 0.62 -0.3
3,645 + GFF5827 0.62 -0.3
3,646 - GFF5827 0.62 -0.6
3,646 - GFF5827 0.62 -0.5
3,795 + GFF5827 0.76 +0.3
3,795 + GFF5827 0.76 +0.9

Or see this region's nucleotide sequence