Strain Fitness in Variovorax sp. SCN45 around GFF5704

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
76,941	+				-0.2
76,942	-				+0.0
76,945	+				-0.7
76,945	+				-0.4
76,945	+				-0.3
76,945	+				-1.2
77,306	+		GFF5703	0.42	+0.9
77,306	+		GFF5703	0.42	-1.9
77,306	+		GFF5703	0.42	+0.4
77,306	+		GFF5703	0.42	+0.1
77,306	+		GFF5703	0.42	-0.3
77,307	-		GFF5703	0.42	-1.3
77,372	+		GFF5703	0.48	+0.1
77,372	+		GFF5703	0.48	-1.2
77,373	-		GFF5703	0.49	-0.0
77,373	-		GFF5703	0.49	+1.7
77,373	-		GFF5703	0.49	-0.8
77,373	-		GFF5703	0.49	+0.2
77,373	-		GFF5703	0.49	+0.1
77,795	+				-0.1
77,795	+				-0.4
77,795	+				+0.8
77,795	+				-1.0
77,795	+				-0.8
77,795	+				-0.9
77,796	-				+0.5
77,796	-				+0.4
77,796	-				-0.8
77,796	-				-0.1
77,796	-				+0.9
77,796	-				-0.0
77,796	-				+0.3
77,796	-				-1.3
77,881	+				-0.2
79,242	+				-0.3
79,444	+				+0.0
79,444	+				-0.5
79,444	+				+0.0
79,444	+				+0.6
79,444	+				+0.4
79,445	-				+1.0
79,445	-				-0.3
79,445	-				+1.2
79,445	-				-0.2
79,482	-				+0.4
79,482	-				-0.9
79,539	+		GFF5705	0.14	+0.1
79,539	+		GFF5705	0.14	-0.8
79,539	+		GFF5705	0.14	-0.1
79,539	+		GFF5705	0.14	-0.4
79,539	+		GFF5705	0.14	+0.3
79,539	+		GFF5705	0.14	+0.0
79,539	+		GFF5705	0.14	-0.4
79,540	-		GFF5705	0.15	+0.1
79,540	-		GFF5705	0.15	+0.0
79,540	-		GFF5705	0.15	+0.4
79,540	-		GFF5705	0.15	-0.3
79,540	-		GFF5705	0.15	+1.2
79,540	-		GFF5705	0.15	-0.0
79,573	+		GFF5705	0.20	-1.6
79,573	+		GFF5705	0.20	-1.6
79,573	+		GFF5705	0.20	-0.6
79,574	-		GFF5705	0.20	-1.4
79,574	-		GFF5705	0.20	+0.0
79,601	-		GFF5705	0.25	-0.2
79,621	+		GFF5705	0.29	-0.5
79,621	+		GFF5705	0.29	-1.0
79,621	+		GFF5705	0.29	-2.3
79,621	+		GFF5705	0.29	-0.2
79,621	+		GFF5705	0.29	+0.4
79,622	-		GFF5705	0.29	-0.2
79,622	-		GFF5705	0.29	-0.2
79,622	-		GFF5705	0.29	+0.6
79,622	-		GFF5705	0.29	-0.1
79,622	-		GFF5705	0.29	+0.4
79,622	-		GFF5705	0.29	-0.5
79,834	+		GFF5705	0.66	-0.4
79,835	-		GFF5705	0.66	+1.0
79,835	-		GFF5705	0.66	+0.2
79,835	-		GFF5705	0.66	+1.0
80,144	+		GFF5706	0.71	-0.7
80,144	+		GFF5706	0.71	+1.0
80,144	+		GFF5706	0.71	+0.2
80,144	-		GFF5706	0.71	+0.5
80,145	-		GFF5706	0.72	-0.1
80,145	-		GFF5706	0.72	+0.9
80,153	+		GFF5706	0.77	+1.0