Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5573 and GFF5574 are separated by 30 nucleotides GFF5574 and GFF5575 overlap by 4 nucleotides
GFF5573 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 193,399 to 194,373
GFF5573
GFF5574 - RidA/YER057c/UK114 superfamily protein, at 194,404 to 194,805
GFF5574
GFF5575 - Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, at 194,802 to 196,424
GFF5575
Position (kb) 194
195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.514 kb on - strand, within GFF5573 at 193.514 kb on - strand, within GFF5573 at 193.514 kb on - strand, within GFF5573 at 193.514 kb on - strand, within GFF5573 at 193.822 kb on + strand, within GFF5573 at 193.822 kb on + strand, within GFF5573 at 193.823 kb on - strand, within GFF5573 at 194.896 kb on + strand at 195.098 kb on - strand, within GFF5575 at 195.098 kb on - strand, within GFF5575 at 195.137 kb on - strand, within GFF5575 at 195.181 kb on + strand, within GFF5575 at 195.202 kb on + strand, within GFF5575 at 195.202 kb on + strand, within GFF5575 at 195.203 kb on - strand, within GFF5575 at 195.203 kb on - strand, within GFF5575 at 195.355 kb on - strand, within GFF5575 at 195.355 kb on - strand, within GFF5575 at 195.378 kb on - strand, within GFF5575 at 195.378 kb on - strand, within GFF5575 at 195.378 kb on - strand, within GFF5575 at 195.379 kb on + strand, within GFF5575 at 195.380 kb on - strand, within GFF5575 at 195.380 kb on - strand, within GFF5575 at 195.380 kb on - strand, within GFF5575 at 195.541 kb on + strand, within GFF5575 at 195.542 kb on - strand, within GFF5575 at 195.542 kb on - strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.559 kb on + strand, within GFF5575 at 195.560 kb on - strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.631 kb on + strand, within GFF5575 at 195.632 kb on - strand, within GFF5575 at 195.632 kb on - strand, within GFF5575
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 193,514 - GFF5573 0.12 +1.0 193,514 - GFF5573 0.12 -0.4 193,514 - GFF5573 0.12 -0.6 193,514 - GFF5573 0.12 -1.8 193,822 + GFF5573 0.43 +0.3 193,822 + GFF5573 0.43 +0.4 193,823 - GFF5573 0.43 -0.4 194,896 + +0.9 195,098 - GFF5575 0.18 -1.6 195,098 - GFF5575 0.18 +1.8 195,137 - GFF5575 0.21 +0.2 195,181 + GFF5575 0.23 -0.3 195,202 + GFF5575 0.25 +0.3 195,202 + GFF5575 0.25 +0.4 195,203 - GFF5575 0.25 -0.0 195,203 - GFF5575 0.25 -1.0 195,355 - GFF5575 0.34 -0.8 195,355 - GFF5575 0.34 -0.1 195,378 - GFF5575 0.35 +0.7 195,378 - GFF5575 0.35 +0.1 195,378 - GFF5575 0.35 +0.2 195,379 + GFF5575 0.36 -0.3 195,380 - GFF5575 0.36 +1.2 195,380 - GFF5575 0.36 -0.3 195,380 - GFF5575 0.36 +0.4 195,541 + GFF5575 0.46 +0.3 195,542 - GFF5575 0.46 +0.4 195,542 - GFF5575 0.46 +0.8 195,559 + GFF5575 0.47 -0.2 195,559 + GFF5575 0.47 +0.8 195,559 + GFF5575 0.47 +0.4 195,560 - GFF5575 0.47 +0.5 195,631 + GFF5575 0.51 +0.6 195,631 + GFF5575 0.51 -0.7 195,631 + GFF5575 0.51 -0.1 195,632 - GFF5575 0.51 -0.6 195,632 - GFF5575 0.51 -0.1
Or see this region's nucleotide sequence