Strain Fitness in Variovorax sp. SCN45 around GFF5570

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5568 and GFF5569 are separated by 132 nucleotidesGFF5569 and GFF5570 are separated by 142 nucleotidesGFF5570 and GFF5571 are separated by 92 nucleotidesGFF5571 and GFF5572 are separated by 218 nucleotides GFF5568 - SSU ribosomal protein S11p (S14e), at 189,636 to 190,040 GFF5568 GFF5569 - SSU ribosomal protein S4p (S9e) @ SSU ribosomal protein S4p (S9e), zinc-independent, at 190,173 to 190,796 GFF5569 GFF5570 - DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6), at 190,939 to 191,928 GFF5570 GFF5571 - LSU ribosomal protein L17p, at 192,021 to 192,419 GFF5571 GFF5572 - FIG00984604: hypothetical protein, at 192,638 to 193,288 GFF5572 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2at 190.841 kb on + strandat 190.841 kb on + strandat 190.841 kb on + strandat 190.841 kb on + strandat 190.841 kb on + strandat 190.841 kb on + strandat 191.983 kb on + strandat 192.417 kb on + strandat 192.417 kb on + strandat 192.518 kb on + strandat 192.620 kb on + strandat 192.621 kb on - strandat 192.621 kb on - strandat 192.621 kb on - strandat 192.621 kb on - strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.624 kb on + strandat 192.625 kb on - strandat 192.625 kb on - strandat 192.625 kb on - strandat 192.625 kb on - strandat 192.628 kb on + strandat 192.629 kb on - strandat 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.768 kb on + strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.769 kb on - strand, within GFF5572at 192.805 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.849 kb on + strand, within GFF5572at 192.850 kb on - strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.858 kb on + strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.859 kb on - strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.919 kb on + strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572at 192.920 kb on - strand, within GFF5572

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
190,841 + -1.6
190,841 + -0.2
190,841 + -0.2
190,841 + +0.3
190,841 + +1.4
190,841 + -0.3
191,983 + +0.6
192,417 + +0.1
192,417 + -0.4
192,518 + +0.2
192,620 + -1.2
192,621 - -0.5
192,621 - -1.0
192,621 - -0.9
192,621 - -0.2
192,624 + -0.0
192,624 + -0.6
192,624 + -0.0
192,624 + -0.4
192,624 + -1.3
192,624 + +0.6
192,624 + +1.1
192,625 - +0.0
192,625 - -0.2
192,625 - -0.1
192,625 - -1.0
192,628 + +0.8
192,629 - -0.1
192,768 + GFF5572 0.20 -0.8
192,768 + GFF5572 0.20 -0.2
192,768 + GFF5572 0.20 +0.3
192,768 + GFF5572 0.20 -1.0
192,768 + GFF5572 0.20 +0.2
192,768 + GFF5572 0.20 +0.3
192,769 - GFF5572 0.20 -0.0
192,769 - GFF5572 0.20 -0.4
192,769 - GFF5572 0.20 +0.2
192,769 - GFF5572 0.20 -0.0
192,769 - GFF5572 0.20 -0.1
192,805 + GFF5572 0.26 +1.6
192,849 + GFF5572 0.32 -0.1
192,849 + GFF5572 0.32 -0.2
192,849 + GFF5572 0.32 +0.5
192,849 + GFF5572 0.32 +1.1
192,849 + GFF5572 0.32 +1.6
192,849 + GFF5572 0.32 -0.9
192,850 - GFF5572 0.33 -0.1
192,858 + GFF5572 0.34 +0.1
192,858 + GFF5572 0.34 +1.8
192,858 + GFF5572 0.34 -1.0
192,858 + GFF5572 0.34 +0.2
192,858 + GFF5572 0.34 +0.5
192,859 - GFF5572 0.34 -0.2
192,859 - GFF5572 0.34 -1.9
192,859 - GFF5572 0.34 +0.2
192,859 - GFF5572 0.34 -0.1
192,859 - GFF5572 0.34 +1.2
192,859 - GFF5572 0.34 -0.5
192,919 + GFF5572 0.43 +0.0
192,919 + GFF5572 0.43 +0.2
192,919 + GFF5572 0.43 -1.0
192,919 + GFF5572 0.43 +0.3
192,919 + GFF5572 0.43 +0.2
192,919 + GFF5572 0.43 -1.0
192,919 + GFF5572 0.43 -0.0
192,919 + GFF5572 0.43 -1.3
192,919 + GFF5572 0.43 -0.4
192,920 - GFF5572 0.43 -0.2
192,920 - GFF5572 0.43 +0.6
192,920 - GFF5572 0.43 +0.0
192,920 - GFF5572 0.43 +0.0
192,920 - GFF5572 0.43 -0.4
192,920 - GFF5572 0.43 -0.1
192,920 - GFF5572 0.43 -0.7
192,920 - GFF5572 0.43 -0.1
192,920 - GFF5572 0.43 -2.0
192,920 - GFF5572 0.43 -0.5
192,920 - GFF5572 0.43 -0.2
192,920 - GFF5572 0.43 +0.3
192,920 - GFF5572 0.43 -1.0

Or see this region's nucleotide sequence