Strain Fitness in Variovorax sp. SCN45 around GFF5556

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5554 and GFF5555 are separated by 215 nucleotidesGFF5555 and GFF5556 are separated by 13 nucleotidesGFF5556 and GFF5557 are separated by 11 nucleotidesGFF5557 and GFF5558 are separated by 8 nucleotidesGFF5558 and GFF5559 are separated by 20 nucleotides GFF5554 - FIG00347521: hypothetical protein, at 182,206 to 183,366 GFF5554 GFF5555 - LSU ribosomal protein L14p (L23e), at 183,582 to 183,950 GFF5555 GFF5556 - LSU ribosomal protein L24p (L26e), at 183,964 to 184,296 GFF5556 GFF5557 - LSU ribosomal protein L5p (L11e), at 184,308 to 184,847 GFF5557 GFF5558 - SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-independent, at 184,856 to 185,161 GFF5558 GFF5559 - SSU ribosomal protein S8p (S15Ae), at 185,182 to 185,577 GFF5559 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2at 183.025 kb on + strand, within GFF5554at 183.025 kb on + strand, within GFF5554at 183.025 kb on + strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.026 kb on - strand, within GFF5554at 183.080 kb on + strand, within GFF5554at 183.080 kb on + strand, within GFF5554at 183.080 kb on + strand, within GFF5554at 183.080 kb on - strand, within GFF5554at 183.081 kb on - strand, within GFF5554at 183.081 kb on - strand, within GFF5554at 183.081 kb on - strand, within GFF5554at 183.084 kb on - strand, within GFF5554at 183.084 kb on - strand, within GFF5554at 183.084 kb on - strand, within GFF5554at 183.084 kb on - strand, within GFF5554at 183.128 kb on + strand, within GFF5554at 183.129 kb on - strand, within GFF5554at 183.129 kb on - strand, within GFF5554at 183.149 kb on + strand, within GFF5554at 183.150 kb on - strand, within GFF5554at 183.150 kb on - strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.187 kb on + strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.188 kb on - strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.189 kb on + strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.190 kb on - strand, within GFF5554at 183.378 kb on + strandat 183.379 kb on - strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.399 kb on + strandat 183.400 kb on - strandat 183.400 kb on - strandat 183.400 kb on - strandat 183.403 kb on - strandat 183.403 kb on - strandat 183.403 kb on - strandat 183.403 kb on - strandat 183.560 kb on + strandat 183.560 kb on + strandat 183.573 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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183,025 + GFF5554 0.71 -0.5
183,025 + GFF5554 0.71 +0.4
183,025 + GFF5554 0.71 +0.1
183,026 - GFF5554 0.71 -0.4
183,026 - GFF5554 0.71 -0.2
183,026 - GFF5554 0.71 -0.3
183,026 - GFF5554 0.71 -0.1
183,026 - GFF5554 0.71 -0.9
183,026 - GFF5554 0.71 -0.2
183,026 - GFF5554 0.71 +0.5
183,026 - GFF5554 0.71 -0.0
183,026 - GFF5554 0.71 -1.1
183,080 + GFF5554 0.75 +0.2
183,080 + GFF5554 0.75 -0.5
183,080 + GFF5554 0.75 -0.3
183,080 - GFF5554 0.75 +0.4
183,081 - GFF5554 0.75 -0.3
183,081 - GFF5554 0.75 +0.8
183,081 - GFF5554 0.75 +0.5
183,084 - GFF5554 0.76 -1.2
183,084 - GFF5554 0.76 +0.0
183,084 - GFF5554 0.76 +0.0
183,084 - GFF5554 0.76 -0.3
183,128 + GFF5554 0.79 -0.4
183,129 - GFF5554 0.80 -0.8
183,129 - GFF5554 0.80 +0.2
183,149 + GFF5554 0.81 -0.3
183,150 - GFF5554 0.81 -0.7
183,150 - GFF5554 0.81 +1.8
183,187 + GFF5554 0.84 -1.7
183,187 + GFF5554 0.84 +0.1
183,187 + GFF5554 0.84 -1.0
183,187 + GFF5554 0.84 -1.0
183,187 + GFF5554 0.84 +0.3
183,187 + GFF5554 0.84 -0.8
183,187 + GFF5554 0.84 -0.3
183,187 + GFF5554 0.84 +0.6
183,187 + GFF5554 0.84 +0.3
183,187 + GFF5554 0.84 +0.3
183,187 + GFF5554 0.84 +1.0
183,187 + GFF5554 0.84 -0.1
183,187 + GFF5554 0.84 -0.2
183,187 + GFF5554 0.84 -0.5
183,187 + GFF5554 0.84 -0.1
183,187 + GFF5554 0.84 -0.3
183,187 + GFF5554 0.84 -0.5
183,187 + GFF5554 0.84 +0.2
183,187 + GFF5554 0.84 -0.3
183,187 + GFF5554 0.84 +1.1
183,188 - GFF5554 0.85 -0.6
183,188 - GFF5554 0.85 +1.1
183,188 - GFF5554 0.85 +0.4
183,188 - GFF5554 0.85 -1.6
183,188 - GFF5554 0.85 -0.2
183,188 - GFF5554 0.85 +0.8
183,188 - GFF5554 0.85 +0.2
183,188 - GFF5554 0.85 +0.4
183,188 - GFF5554 0.85 +0.5
183,188 - GFF5554 0.85 +0.3
183,188 - GFF5554 0.85 +1.2
183,188 - GFF5554 0.85 -0.3
183,188 - GFF5554 0.85 -0.7
183,188 - GFF5554 0.85 +1.1
183,188 - GFF5554 0.85 -0.6
183,188 - GFF5554 0.85 +0.1
183,188 - GFF5554 0.85 +1.1
183,189 + GFF5554 0.85 +2.1
183,189 + GFF5554 0.85 -1.0
183,189 + GFF5554 0.85 -0.4
183,189 + GFF5554 0.85 -0.2
183,189 + GFF5554 0.85 -1.3
183,189 + GFF5554 0.85 +0.4
183,190 - GFF5554 0.85 +1.8
183,190 - GFF5554 0.85 -0.3
183,190 - GFF5554 0.85 -0.0
183,190 - GFF5554 0.85 -0.0
183,190 - GFF5554 0.85 -0.4
183,378 + -0.0
183,379 - +0.0
183,399 + -1.0
183,399 + -0.3
183,399 + -0.9
183,399 + +0.6
183,399 + -0.3
183,399 + +0.2
183,399 + +0.0
183,399 + -1.2
183,399 + -0.2
183,399 + -1.3
183,399 + +0.1
183,400 - +2.2
183,400 - -0.2
183,400 - -1.3
183,403 - -0.6
183,403 - -0.6
183,403 - +0.1
183,403 - -0.2
183,560 + -0.5
183,560 + -0.5
183,573 + -1.8

Or see this region's nucleotide sequence