Strain Fitness in Variovorax sp. SCN45 around GFF554

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF552 and GFF553 are separated by 26 nucleotidesGFF553 and GFF554 are separated by 25 nucleotidesGFF554 and GFF555 are separated by 17 nucleotidesGFF555 and GFF556 are separated by 81 nucleotides GFF552 - Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8), at 594,034 to 594,627 GFF552 GFF553 - Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8), at 594,654 to 595,166 GFF553 GFF554 - UDP-2,3-diacylglucosamine diphosphatase (EC 3.6.1.54), at 595,192 to 595,968 GFF554 GFF555 - Putative inner membrane protein, at 595,986 to 596,789 GFF555 GFF556 - no description, at 596,871 to 597,467 GFF556 Position (kb) 595 596Strain fitness (log2 ratio) -2 -1 0 1 2at 594.214 kb on + strand, within GFF552at 594.223 kb on + strand, within GFF552at 594.223 kb on + strand, within GFF552at 594.223 kb on + strand, within GFF552at 594.223 kb on + strand, within GFF552at 594.223 kb on + strand, within GFF552at 594.223 kb on + strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.224 kb on - strand, within GFF552at 594.241 kb on + strand, within GFF552at 594.241 kb on + strand, within GFF552at 594.241 kb on + strand, within GFF552at 594.241 kb on + strand, within GFF552at 594.242 kb on - strand, within GFF552at 594.242 kb on - strand, within GFF552at 594.242 kb on - strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.376 kb on + strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.377 kb on - strand, within GFF552at 594.481 kb on + strand, within GFF552at 594.482 kb on - strand, within GFF552at 594.487 kb on + strand, within GFF552at 594.487 kb on + strand, within GFF552at 594.487 kb on + strand, within GFF552at 594.487 kb on + strand, within GFF552at 594.488 kb on - strand, within GFF552at 594.488 kb on - strand, within GFF552at 594.488 kb on - strand, within GFF552at 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.626 kb on - strandat 594.690 kb on + strandat 594.690 kb on + strandat 594.690 kb on + strandat 594.690 kb on + strandat 594.690 kb on + strandat 594.690 kb on + strandat 594.690 kb on + strandat 594.756 kb on + strand, within GFF553at 594.756 kb on + strand, within GFF553at 594.756 kb on + strand, within GFF553at 594.756 kb on + strand, within GFF553at 594.756 kb on + strand, within GFF553at 594.756 kb on + strand, within GFF553at 594.756 kb on + strand, within GFF553at 594.774 kb on + strand, within GFF553at 594.774 kb on + strand, within GFF553at 594.774 kb on + strand, within GFF553at 594.774 kb on + strand, within GFF553at 594.774 kb on + strand, within GFF553at 594.774 kb on + strand, within GFF553at 594.774 kb on + strand, within GFF553at 594.774 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 594.909 kb on + strand, within GFF553at 595.966 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.061 kb on + strandat 596.244 kb on + strand, within GFF555at 596.244 kb on + strand, within GFF555at 596.245 kb on - strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.331 kb on + strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.332 kb on - strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.427 kb on + strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.428 kb on - strand, within GFF555at 596.560 kb on + strand, within GFF555at 596.560 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.574 kb on + strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.575 kb on - strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.599 kb on + strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.600 kb on - strand, within GFF555at 596.643 kb on + strand, within GFF555at 596.643 kb on + strand, within GFF555at 596.644 kb on - strand, within GFF555at 596.691 kb on + strand, within GFF555at 596.691 kb on + strand, within GFF555at 596.692 kb on - strand, within GFF555at 596.692 kb on - strand, within GFF555at 596.765 kb on + strandat 596.805 kb on - strandat 596.831 kb on - strandat 596.831 kb on - strandat 596.844 kb on + strandat 596.845 kb on - strandat 596.863 kb on + strandat 596.863 kb on + strandat 596.864 kb on - strandat 596.864 kb on - strandat 596.871 kb on - strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.886 kb on + strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.887 kb on - strandat 596.935 kb on + strand, within GFF556at 596.935 kb on + strand, within GFF556at 596.936 kb on - strand, within GFF556at 596.952 kb on + strand, within GFF556

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
594,214 + GFF552 0.30 -2.4
594,223 + GFF552 0.32 +0.0
594,223 + GFF552 0.32 +0.1
594,223 + GFF552 0.32 -0.6
594,223 + GFF552 0.32 +0.8
594,223 + GFF552 0.32 -0.1
594,223 + GFF552 0.32 +0.7
594,224 - GFF552 0.32 -0.1
594,224 - GFF552 0.32 -1.2
594,224 - GFF552 0.32 -0.5
594,224 - GFF552 0.32 -0.4
594,224 - GFF552 0.32 +0.3
594,224 - GFF552 0.32 -1.0
594,224 - GFF552 0.32 -0.0
594,224 - GFF552 0.32 -0.7
594,224 - GFF552 0.32 -0.6
594,224 - GFF552 0.32 +1.8
594,224 - GFF552 0.32 -1.5
594,224 - GFF552 0.32 +0.1
594,224 - GFF552 0.32 +0.9
594,224 - GFF552 0.32 -0.4
594,224 - GFF552 0.32 -0.9
594,224 - GFF552 0.32 -0.2
594,241 + GFF552 0.35 +0.1
594,241 + GFF552 0.35 +0.4
594,241 + GFF552 0.35 -1.0
594,241 + GFF552 0.35 -1.3
594,242 - GFF552 0.35 -1.0
594,242 - GFF552 0.35 -2.1
594,242 - GFF552 0.35 +0.5
594,376 + GFF552 0.58 -0.5
594,376 + GFF552 0.58 +0.7
594,376 + GFF552 0.58 -0.0
594,376 + GFF552 0.58 -0.0
594,376 + GFF552 0.58 +0.5
594,376 + GFF552 0.58 +0.6
594,376 + GFF552 0.58 +0.4
594,376 + GFF552 0.58 +0.1
594,376 + GFF552 0.58 +0.4
594,376 + GFF552 0.58 +0.2
594,376 + GFF552 0.58 -1.2
594,376 + GFF552 0.58 -1.6
594,376 + GFF552 0.58 +0.5
594,376 + GFF552 0.58 -1.6
594,376 + GFF552 0.58 -1.4
594,376 + GFF552 0.58 -1.1
594,376 + GFF552 0.58 -0.8
594,376 + GFF552 0.58 +0.7
594,376 + GFF552 0.58 +0.3
594,376 + GFF552 0.58 +0.2
594,376 + GFF552 0.58 +0.8
594,376 + GFF552 0.58 -1.0
594,376 + GFF552 0.58 +0.7
594,377 - GFF552 0.58 -0.5
594,377 - GFF552 0.58 +0.6
594,377 - GFF552 0.58 -1.4
594,377 - GFF552 0.58 +1.2
594,377 - GFF552 0.58 -1.5
594,377 - GFF552 0.58 -0.2
594,377 - GFF552 0.58 -0.7
594,377 - GFF552 0.58 -0.3
594,377 - GFF552 0.58 -1.5
594,377 - GFF552 0.58 -0.7
594,377 - GFF552 0.58 -0.5
594,377 - GFF552 0.58 -0.2
594,377 - GFF552 0.58 -0.9
594,377 - GFF552 0.58 +1.2
594,377 - GFF552 0.58 -0.5
594,377 - GFF552 0.58 +0.2
594,377 - GFF552 0.58 +1.2
594,377 - GFF552 0.58 -0.3
594,377 - GFF552 0.58 +0.6
594,377 - GFF552 0.58 +1.1
594,377 - GFF552 0.58 +0.4
594,377 - GFF552 0.58 -0.6
594,377 - GFF552 0.58 -0.5
594,377 - GFF552 0.58 -0.8
594,481 + GFF552 0.75 -0.8
594,482 - GFF552 0.75 +0.2
594,487 + GFF552 0.76 -0.5
594,487 + GFF552 0.76 +0.6
594,487 + GFF552 0.76 +0.5
594,487 + GFF552 0.76 +0.0
594,488 - GFF552 0.76 +0.4
594,488 - GFF552 0.76 +0.2
594,488 - GFF552 0.76 +0.1
594,626 - +0.1
594,626 - +0.7
594,626 - -0.0
594,626 - -0.4
594,626 - -1.0
594,626 - -1.0
594,626 - +0.0
594,626 - +0.5
594,626 - -0.8
594,626 - +0.5
594,626 - -0.1
594,690 + -0.1
594,690 + +0.7
594,690 + -0.1
594,690 + +0.2
594,690 + +0.6
594,690 + +0.2
594,690 + -1.5
594,756 + GFF553 0.20 -0.2
594,756 + GFF553 0.20 -1.4
594,756 + GFF553 0.20 -0.9
594,756 + GFF553 0.20 -0.7
594,756 + GFF553 0.20 +0.2
594,756 + GFF553 0.20 -1.0
594,756 + GFF553 0.20 -0.1
594,774 + GFF553 0.23 +0.1
594,774 + GFF553 0.23 -1.3
594,774 + GFF553 0.23 -0.5
594,774 + GFF553 0.23 -0.6
594,774 + GFF553 0.23 +0.2
594,774 + GFF553 0.23 -1.1
594,774 + GFF553 0.23 -1.1
594,774 + GFF553 0.23 -0.4
594,909 + GFF553 0.50 -1.4
594,909 + GFF553 0.50 -0.7
594,909 + GFF553 0.50 -0.4
594,909 + GFF553 0.50 -1.9
594,909 + GFF553 0.50 -0.6
594,909 + GFF553 0.50 +0.3
594,909 + GFF553 0.50 +1.4
594,909 + GFF553 0.50 -0.4
594,909 + GFF553 0.50 -0.2
594,909 + GFF553 0.50 +1.5
594,909 + GFF553 0.50 -0.6
594,909 + GFF553 0.50 -1.1
594,909 + GFF553 0.50 +0.3
594,909 + GFF553 0.50 +0.3
594,909 + GFF553 0.50 +0.3
594,909 + GFF553 0.50 -0.4
594,909 + GFF553 0.50 +0.1
594,909 + GFF553 0.50 -0.4
594,909 + GFF553 0.50 +0.1
594,909 + GFF553 0.50 -0.8
594,909 + GFF553 0.50 -0.5
594,909 + GFF553 0.50 -0.4
594,909 + GFF553 0.50 -0.8
594,909 + GFF553 0.50 +0.9
594,909 + GFF553 0.50 -0.9
595,966 + -0.1
596,061 + +2.2
596,061 + +0.3
596,061 + -1.3
596,061 + -1.1
596,244 + GFF555 0.32 +0.1
596,244 + GFF555 0.32 +0.2
596,245 - GFF555 0.32 -1.1
596,331 + GFF555 0.43 +0.7
596,331 + GFF555 0.43 -0.8
596,331 + GFF555 0.43 -0.5
596,331 + GFF555 0.43 -0.7
596,331 + GFF555 0.43 -0.5
596,331 + GFF555 0.43 +0.2
596,331 + GFF555 0.43 +0.5
596,331 + GFF555 0.43 +2.2
596,331 + GFF555 0.43 +1.0
596,331 + GFF555 0.43 -1.1
596,332 - GFF555 0.43 +1.2
596,332 - GFF555 0.43 -0.6
596,332 - GFF555 0.43 -1.0
596,332 - GFF555 0.43 -0.1
596,427 + GFF555 0.55 +1.6
596,427 + GFF555 0.55 +0.0
596,427 + GFF555 0.55 +0.1
596,427 + GFF555 0.55 -1.0
596,427 + GFF555 0.55 +0.5
596,428 - GFF555 0.55 -2.0
596,428 - GFF555 0.55 +0.1
596,428 - GFF555 0.55 +0.3
596,560 + GFF555 0.71 -1.8
596,560 + GFF555 0.71 -0.1
596,574 + GFF555 0.73 -0.8
596,574 + GFF555 0.73 +0.8
596,574 + GFF555 0.73 +0.5
596,575 - GFF555 0.73 -0.5
596,575 - GFF555 0.73 -0.8
596,575 - GFF555 0.73 -0.6
596,599 + GFF555 0.76 +0.4
596,599 + GFF555 0.76 +0.9
596,599 + GFF555 0.76 -0.1
596,599 + GFF555 0.76 -0.5
596,600 - GFF555 0.76 -0.2
596,600 - GFF555 0.76 -0.7
596,600 - GFF555 0.76 -0.5
596,643 + GFF555 0.82 -0.7
596,643 + GFF555 0.82 -0.3
596,644 - GFF555 0.82 +0.5
596,691 + GFF555 0.88 -0.5
596,691 + GFF555 0.88 -0.5
596,692 - GFF555 0.88 -1.4
596,692 - GFF555 0.88 -0.4
596,765 + -0.3
596,805 - -0.7
596,831 - -0.0
596,831 - +0.2
596,844 + -0.3
596,845 - -0.7
596,863 + -0.7
596,863 + -0.4
596,864 - -1.6
596,864 - -0.8
596,871 - -0.1
596,886 + -0.2
596,886 + -0.7
596,886 + +0.6
596,886 + -0.5
596,886 + +0.2
596,886 + -0.1
596,886 + -0.4
596,886 + +1.2
596,886 + -0.3
596,886 + +0.6
596,886 + -0.1
596,886 + -0.5
596,887 - -0.4
596,887 - -0.2
596,887 - -0.7
596,887 - +0.2
596,887 - +0.1
596,887 - -0.8
596,887 - -0.1
596,887 - -0.2
596,887 - +0.8
596,935 + GFF556 0.11 -0.4
596,935 + GFF556 0.11 +0.5
596,936 - GFF556 0.11 +0.2
596,952 + GFF556 0.14 +0.3

Or see this region's nucleotide sequence