Strain Fitness in Variovorax sp. SCN45 around GFF5539

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5538 and GFF5539 are separated by 6 nucleotidesGFF5539 and GFF5540 are separated by 114 nucleotidesGFF5540 and GFF5541 are separated by 15 nucleotides GFF5538 - ATP-dependent DNA helicase RecG (EC 3.6.4.12), at 167,063 to 169,195 GFF5538 GFF5539 - Transporter, LysE family, at 169,202 to 169,834 GFF5539 GFF5540 - FIG01201438: hypothetical protein, at 169,949 to 170,389 GFF5540 GFF5541 - Transcriptional regulator, GntR family, at 170,405 to 171,109 GFF5541 Position (kb) 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.386 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.386 kb on - strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.416 kb on + strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.417 kb on - strand, within GFF5538at 168.419 kb on + strand, within GFF5538at 168.419 kb on + strand, within GFF5538at 168.420 kb on - strand, within GFF5538at 168.420 kb on - strand, within GFF5538at 168.420 kb on - strand, within GFF5538at 168.557 kb on + strand, within GFF5538at 168.558 kb on - strand, within GFF5538at 168.558 kb on - strand, within GFF5538at 168.558 kb on - strand, within GFF5538at 168.761 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 168.893 kb on + strand, within GFF5538at 169.181 kb on + strandat 169.181 kb on + strandat 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.335 kb on + strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.336 kb on - strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.389 kb on + strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.390 kb on - strand, within GFF5539at 169.401 kb on + strand, within GFF5539at 169.590 kb on + strand, within GFF5539at 169.590 kb on + strand, within GFF5539at 169.591 kb on - strand, within GFF5539at 169.591 kb on - strand, within GFF5539at 169.591 kb on - strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.605 kb on + strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.606 kb on - strand, within GFF5539at 169.818 kb on + strandat 169.818 kb on + strandat 169.819 kb on - strandat 169.819 kb on - strandat 169.819 kb on - strandat 169.839 kb on + strandat 169.839 kb on + strandat 169.839 kb on + strandat 169.871 kb on + strandat 169.871 kb on + strandat 169.872 kb on - strandat 169.874 kb on - strandat 170.049 kb on - strand, within GFF5540at 170.049 kb on - strand, within GFF5540at 170.049 kb on - strand, within GFF5540at 170.049 kb on - strand, within GFF5540at 170.049 kb on - strand, within GFF5540at 170.333 kb on + strand, within GFF5540at 170.333 kb on + strand, within GFF5540at 170.333 kb on + strand, within GFF5540at 170.334 kb on - strand, within GFF5540at 170.334 kb on - strand, within GFF5540at 170.334 kb on - strand, within GFF5540at 170.334 kb on - strand, within GFF5540at 170.334 kb on - strand, within GFF5540at 170.334 kb on - strand, within GFF5540at 170.334 kb on - strand, within GFF5540at 170.442 kb on + strandat 170.442 kb on + strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.443 kb on - strandat 170.478 kb on + strand, within GFF5541at 170.478 kb on + strand, within GFF5541at 170.478 kb on + strand, within GFF5541at 170.478 kb on + strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.479 kb on - strand, within GFF5541at 170.556 kb on + strand, within GFF5541at 170.556 kb on + strand, within GFF5541at 170.557 kb on - strand, within GFF5541at 170.784 kb on + strand, within GFF5541at 170.784 kb on + strand, within GFF5541at 170.785 kb on - strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.829 kb on + strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541at 170.830 kb on - strand, within GFF5541

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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168,386 - GFF5538 0.62 -0.5
168,386 - GFF5538 0.62 +0.2
168,386 - GFF5538 0.62 -0.8
168,386 - GFF5538 0.62 -0.5
168,386 - GFF5538 0.62 -0.5
168,416 + GFF5538 0.63 -0.8
168,416 + GFF5538 0.63 -0.5
168,416 + GFF5538 0.63 -0.9
168,416 + GFF5538 0.63 -0.2
168,416 + GFF5538 0.63 -1.5
168,416 + GFF5538 0.63 -0.4
168,416 + GFF5538 0.63 +1.2
168,416 + GFF5538 0.63 -1.9
168,416 + GFF5538 0.63 +0.3
168,416 + GFF5538 0.63 +0.6
168,417 - GFF5538 0.63 -1.3
168,417 - GFF5538 0.63 -0.8
168,417 - GFF5538 0.63 -0.1
168,417 - GFF5538 0.63 -1.0
168,417 - GFF5538 0.63 -0.4
168,417 - GFF5538 0.63 +0.2
168,417 - GFF5538 0.63 -0.1
168,419 + GFF5538 0.64 -0.4
168,419 + GFF5538 0.64 -0.3
168,420 - GFF5538 0.64 -0.0
168,420 - GFF5538 0.64 -1.7
168,420 - GFF5538 0.64 -1.0
168,557 + GFF5538 0.70 -0.9
168,558 - GFF5538 0.70 -1.2
168,558 - GFF5538 0.70 -0.9
168,558 - GFF5538 0.70 -0.1
168,761 + GFF5538 0.80 +0.4
168,893 + GFF5538 0.86 -0.6
168,893 + GFF5538 0.86 -0.7
168,893 + GFF5538 0.86 -0.0
168,893 + GFF5538 0.86 -1.6
168,893 + GFF5538 0.86 -1.3
169,181 + -0.4
169,181 + -1.3
169,335 + GFF5539 0.21 -0.6
169,335 + GFF5539 0.21 +0.6
169,335 + GFF5539 0.21 +0.2
169,335 + GFF5539 0.21 -2.0
169,335 + GFF5539 0.21 -0.7
169,335 + GFF5539 0.21 -1.2
169,336 - GFF5539 0.21 -0.3
169,336 - GFF5539 0.21 +2.4
169,336 - GFF5539 0.21 +0.1
169,336 - GFF5539 0.21 +1.6
169,336 - GFF5539 0.21 -0.6
169,389 + GFF5539 0.30 +1.6
169,389 + GFF5539 0.30 -0.4
169,389 + GFF5539 0.30 -0.4
169,389 + GFF5539 0.30 +0.8
169,389 + GFF5539 0.30 -0.1
169,389 + GFF5539 0.30 -0.8
169,389 + GFF5539 0.30 -1.3
169,390 - GFF5539 0.30 +0.7
169,390 - GFF5539 0.30 -0.2
169,390 - GFF5539 0.30 -0.4
169,390 - GFF5539 0.30 -0.5
169,390 - GFF5539 0.30 +0.8
169,401 + GFF5539 0.31 -0.7
169,590 + GFF5539 0.61 -0.5
169,590 + GFF5539 0.61 +0.6
169,591 - GFF5539 0.61 -0.1
169,591 - GFF5539 0.61 -0.1
169,591 - GFF5539 0.61 +0.6
169,605 + GFF5539 0.64 -1.5
169,605 + GFF5539 0.64 +0.3
169,605 + GFF5539 0.64 -0.4
169,605 + GFF5539 0.64 +0.8
169,605 + GFF5539 0.64 -0.5
169,605 + GFF5539 0.64 +1.1
169,605 + GFF5539 0.64 -1.1
169,605 + GFF5539 0.64 -0.2
169,605 + GFF5539 0.64 -1.6
169,605 + GFF5539 0.64 +1.1
169,605 + GFF5539 0.64 -0.7
169,605 + GFF5539 0.64 -0.5
169,606 - GFF5539 0.64 +0.6
169,606 - GFF5539 0.64 +0.1
169,606 - GFF5539 0.64 +1.0
169,606 - GFF5539 0.64 -0.0
169,606 - GFF5539 0.64 +1.4
169,818 + -0.8
169,818 + -0.2
169,819 - +0.2
169,819 - -1.5
169,819 - +0.0
169,839 + +0.0
169,839 + -0.5
169,839 + +0.8
169,871 + -1.2
169,871 + -0.9
169,872 - +0.1
169,874 - +0.3
170,049 - GFF5540 0.23 -0.3
170,049 - GFF5540 0.23 +0.2
170,049 - GFF5540 0.23 +0.1
170,049 - GFF5540 0.23 +0.6
170,049 - GFF5540 0.23 -0.1
170,333 + GFF5540 0.87 -0.4
170,333 + GFF5540 0.87 -2.9
170,333 + GFF5540 0.87 +0.3
170,334 - GFF5540 0.87 -0.7
170,334 - GFF5540 0.87 -0.2
170,334 - GFF5540 0.87 +0.4
170,334 - GFF5540 0.87 -0.4
170,334 - GFF5540 0.87 -0.2
170,334 - GFF5540 0.87 -0.8
170,334 - GFF5540 0.87 -0.6
170,442 + -0.9
170,442 + +0.2
170,443 - +1.3
170,443 - -1.2
170,443 - +1.2
170,443 - -1.6
170,443 - -0.6
170,443 - -0.8
170,478 + GFF5541 0.10 +0.1
170,478 + GFF5541 0.10 -0.3
170,478 + GFF5541 0.10 +0.1
170,478 + GFF5541 0.10 -1.2
170,479 - GFF5541 0.10 -1.4
170,479 - GFF5541 0.10 +1.0
170,479 - GFF5541 0.10 +1.4
170,479 - GFF5541 0.10 +0.2
170,479 - GFF5541 0.10 +0.8
170,479 - GFF5541 0.10 +1.8
170,556 + GFF5541 0.21 -0.2
170,556 + GFF5541 0.21 +0.0
170,557 - GFF5541 0.22 -0.3
170,784 + GFF5541 0.54 -1.0
170,784 + GFF5541 0.54 +0.3
170,785 - GFF5541 0.54 +0.7
170,829 + GFF5541 0.60 -0.6
170,829 + GFF5541 0.60 -0.2
170,829 + GFF5541 0.60 -1.2
170,829 + GFF5541 0.60 -1.1
170,829 + GFF5541 0.60 +0.4
170,829 + GFF5541 0.60 -1.2
170,830 - GFF5541 0.60 +0.8
170,830 - GFF5541 0.60 -0.1
170,830 - GFF5541 0.60 -0.8
170,830 - GFF5541 0.60 -0.9
170,830 - GFF5541 0.60 +2.1
170,830 - GFF5541 0.60 +1.9
170,830 - GFF5541 0.60 -0.2
170,830 - GFF5541 0.60 -0.6
170,830 - GFF5541 0.60 -0.2
170,830 - GFF5541 0.60 -0.8
170,830 - GFF5541 0.60 +0.2
170,830 - GFF5541 0.60 -0.3
170,830 - GFF5541 0.60 +0.1

Or see this region's nucleotide sequence