Strain Fitness in Variovorax sp. SCN45 around GFF5514

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5513 and GFF5514 overlap by 4 nucleotidesGFF5514 and GFF5515 are separated by 12 nucleotides GFF5513 - N5-carboxyaminoimidazole ribonucleotide synthase (EC 6.3.4.18), at 143,357 to 144,547 GFF5513 GFF5514 - Threonylcarbamoyl-AMP synthase (EC 2.7.7.87) / SUA5 domain with internal deletion, at 144,544 to 145,545 GFF5514 GFF5515 - Lysophospholipase (EC 3.1.1.5), at 145,558 to 147,138 GFF5515 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2at 144.107 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.107 kb on + strand, within GFF5513at 144.200 kb on + strand, within GFF5513at 144.200 kb on + strand, within GFF5513at 144.404 kb on + strand, within GFF5513at 144.404 kb on + strand, within GFF5513at 144.404 kb on + strand, within GFF5513at 144.405 kb on - strand, within GFF5513at 145.637 kb on + strandat 145.637 kb on + strandat 145.637 kb on + strandat 145.638 kb on - strandat 145.638 kb on - strandat 145.638 kb on - strandat 145.736 kb on + strand, within GFF5515at 145.736 kb on + strand, within GFF5515at 145.737 kb on - strand, within GFF5515at 145.811 kb on + strand, within GFF5515at 145.811 kb on + strand, within GFF5515at 145.811 kb on + strand, within GFF5515at 145.811 kb on + strand, within GFF5515at 145.812 kb on - strand, within GFF5515at 145.812 kb on - strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.048 kb on + strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.049 kb on - strand, within GFF5515at 146.078 kb on + strand, within GFF5515at 146.078 kb on + strand, within GFF5515at 146.078 kb on + strand, within GFF5515at 146.078 kb on + strand, within GFF5515at 146.078 kb on + strand, within GFF5515at 146.079 kb on - strand, within GFF5515at 146.079 kb on - strand, within GFF5515at 146.079 kb on - strand, within GFF5515at 146.216 kb on + strand, within GFF5515at 146.216 kb on + strand, within GFF5515at 146.216 kb on + strand, within GFF5515at 146.216 kb on + strand, within GFF5515at 146.216 kb on + strand, within GFF5515at 146.216 kb on + strand, within GFF5515at 146.216 kb on + strand, within GFF5515at 146.217 kb on - strand, within GFF5515at 146.217 kb on - strand, within GFF5515at 146.217 kb on - strand, within GFF5515at 146.217 kb on - strand, within GFF5515at 146.217 kb on - strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.228 kb on + strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.229 kb on - strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.249 kb on + strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.250 kb on - strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.336 kb on + strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.337 kb on - strand, within GFF5515at 146.438 kb on + strand, within GFF5515at 146.438 kb on + strand, within GFF5515at 146.438 kb on + strand, within GFF5515at 146.438 kb on + strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.439 kb on - strand, within GFF5515at 146.453 kb on + strand, within GFF5515

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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144,107 + GFF5513 0.63 -0.2
144,107 + GFF5513 0.63 -1.2
144,107 + GFF5513 0.63 -1.6
144,107 + GFF5513 0.63 -1.9
144,107 + GFF5513 0.63 -0.2
144,200 + GFF5513 0.71 -1.5
144,200 + GFF5513 0.71 -0.5
144,404 + GFF5513 0.88 -1.0
144,404 + GFF5513 0.88 -1.6
144,404 + GFF5513 0.88 -0.2
144,405 - GFF5513 0.88 -1.5
145,637 + -1.2
145,637 + +0.1
145,637 + -0.8
145,638 - -0.3
145,638 - -0.4
145,638 - +0.1
145,736 + GFF5515 0.11 -0.3
145,736 + GFF5515 0.11 +0.5
145,737 - GFF5515 0.11 +0.2
145,811 + GFF5515 0.16 +2.1
145,811 + GFF5515 0.16 -0.6
145,811 + GFF5515 0.16 -0.3
145,811 + GFF5515 0.16 -2.4
145,812 - GFF5515 0.16 -0.8
145,812 - GFF5515 0.16 -0.4
146,048 + GFF5515 0.31 +0.4
146,048 + GFF5515 0.31 +0.0
146,048 + GFF5515 0.31 -0.4
146,048 + GFF5515 0.31 -0.3
146,048 + GFF5515 0.31 -0.5
146,048 + GFF5515 0.31 -0.0
146,048 + GFF5515 0.31 -0.5
146,048 + GFF5515 0.31 -0.5
146,048 + GFF5515 0.31 -1.6
146,048 + GFF5515 0.31 -2.7
146,048 + GFF5515 0.31 -0.1
146,048 + GFF5515 0.31 -0.8
146,048 + GFF5515 0.31 -1.0
146,048 + GFF5515 0.31 +0.4
146,048 + GFF5515 0.31 +1.0
146,048 + GFF5515 0.31 +0.9
146,048 + GFF5515 0.31 -0.4
146,048 + GFF5515 0.31 -0.1
146,048 + GFF5515 0.31 -0.5
146,048 + GFF5515 0.31 +0.0
146,049 - GFF5515 0.31 -1.0
146,049 - GFF5515 0.31 -0.1
146,049 - GFF5515 0.31 -0.5
146,049 - GFF5515 0.31 -0.3
146,049 - GFF5515 0.31 +0.3
146,049 - GFF5515 0.31 -0.1
146,049 - GFF5515 0.31 +2.3
146,049 - GFF5515 0.31 -0.0
146,049 - GFF5515 0.31 -0.5
146,049 - GFF5515 0.31 +0.0
146,049 - GFF5515 0.31 +0.3
146,049 - GFF5515 0.31 -0.8
146,049 - GFF5515 0.31 -2.0
146,049 - GFF5515 0.31 +0.8
146,049 - GFF5515 0.31 +0.2
146,049 - GFF5515 0.31 +0.2
146,078 + GFF5515 0.33 -2.0
146,078 + GFF5515 0.33 -0.4
146,078 + GFF5515 0.33 -1.1
146,078 + GFF5515 0.33 -0.1
146,078 + GFF5515 0.33 -0.4
146,079 - GFF5515 0.33 -1.0
146,079 - GFF5515 0.33 -0.3
146,079 - GFF5515 0.33 -0.6
146,216 + GFF5515 0.42 -0.1
146,216 + GFF5515 0.42 +0.4
146,216 + GFF5515 0.42 -0.5
146,216 + GFF5515 0.42 -0.7
146,216 + GFF5515 0.42 +0.6
146,216 + GFF5515 0.42 +1.0
146,216 + GFF5515 0.42 +0.2
146,217 - GFF5515 0.42 +0.3
146,217 - GFF5515 0.42 +0.8
146,217 - GFF5515 0.42 -0.1
146,217 - GFF5515 0.42 -0.2
146,217 - GFF5515 0.42 -0.4
146,228 + GFF5515 0.42 -0.5
146,228 + GFF5515 0.42 +0.0
146,228 + GFF5515 0.42 -0.2
146,228 + GFF5515 0.42 -1.0
146,228 + GFF5515 0.42 -0.8
146,228 + GFF5515 0.42 +0.6
146,228 + GFF5515 0.42 +0.1
146,228 + GFF5515 0.42 -0.3
146,228 + GFF5515 0.42 -0.2
146,228 + GFF5515 0.42 +0.5
146,228 + GFF5515 0.42 -0.1
146,229 - GFF5515 0.42 -0.5
146,229 - GFF5515 0.42 -0.5
146,229 - GFF5515 0.42 -0.2
146,229 - GFF5515 0.42 -0.2
146,229 - GFF5515 0.42 +0.1
146,229 - GFF5515 0.42 +0.0
146,229 - GFF5515 0.42 -1.0
146,229 - GFF5515 0.42 -0.2
146,229 - GFF5515 0.42 +0.2
146,229 - GFF5515 0.42 -0.0
146,229 - GFF5515 0.42 -0.0
146,229 - GFF5515 0.42 +2.0
146,229 - GFF5515 0.42 -0.8
146,229 - GFF5515 0.42 +0.0
146,229 - GFF5515 0.42 +0.2
146,249 + GFF5515 0.44 -1.2
146,249 + GFF5515 0.44 +1.0
146,249 + GFF5515 0.44 +0.2
146,249 + GFF5515 0.44 +0.2
146,249 + GFF5515 0.44 +0.3
146,249 + GFF5515 0.44 -0.1
146,249 + GFF5515 0.44 -0.0
146,249 + GFF5515 0.44 -0.8
146,249 + GFF5515 0.44 -1.2
146,249 + GFF5515 0.44 -0.7
146,249 + GFF5515 0.44 +0.6
146,250 - GFF5515 0.44 +0.5
146,250 - GFF5515 0.44 +0.1
146,250 - GFF5515 0.44 +1.8
146,250 - GFF5515 0.44 -0.1
146,250 - GFF5515 0.44 -0.6
146,250 - GFF5515 0.44 +0.2
146,250 - GFF5515 0.44 -0.4
146,250 - GFF5515 0.44 -0.3
146,250 - GFF5515 0.44 +0.1
146,250 - GFF5515 0.44 -0.2
146,250 - GFF5515 0.44 -0.5
146,250 - GFF5515 0.44 -1.8
146,250 - GFF5515 0.44 -0.7
146,250 - GFF5515 0.44 +0.1
146,336 + GFF5515 0.49 -1.5
146,336 + GFF5515 0.49 +0.1
146,336 + GFF5515 0.49 +0.7
146,336 + GFF5515 0.49 -0.0
146,336 + GFF5515 0.49 +0.2
146,336 + GFF5515 0.49 -1.9
146,336 + GFF5515 0.49 +0.2
146,336 + GFF5515 0.49 +0.0
146,336 + GFF5515 0.49 -0.5
146,336 + GFF5515 0.49 -0.2
146,336 + GFF5515 0.49 +0.5
146,336 + GFF5515 0.49 -0.8
146,336 + GFF5515 0.49 +0.4
146,336 + GFF5515 0.49 -0.4
146,336 + GFF5515 0.49 -0.6
146,336 + GFF5515 0.49 +0.3
146,337 - GFF5515 0.49 +0.2
146,337 - GFF5515 0.49 +1.6
146,337 - GFF5515 0.49 -0.5
146,337 - GFF5515 0.49 +0.5
146,337 - GFF5515 0.49 -0.4
146,337 - GFF5515 0.49 +0.2
146,337 - GFF5515 0.49 +0.3
146,337 - GFF5515 0.49 +0.3
146,337 - GFF5515 0.49 +0.2
146,337 - GFF5515 0.49 -0.7
146,337 - GFF5515 0.49 -0.1
146,337 - GFF5515 0.49 -0.2
146,337 - GFF5515 0.49 +1.2
146,337 - GFF5515 0.49 -1.5
146,337 - GFF5515 0.49 +0.4
146,337 - GFF5515 0.49 +0.7
146,337 - GFF5515 0.49 +0.1
146,337 - GFF5515 0.49 -0.7
146,438 + GFF5515 0.56 +0.6
146,438 + GFF5515 0.56 +1.0
146,438 + GFF5515 0.56 -0.9
146,438 + GFF5515 0.56 -0.2
146,439 - GFF5515 0.56 +0.8
146,439 - GFF5515 0.56 -0.3
146,439 - GFF5515 0.56 -1.3
146,439 - GFF5515 0.56 +0.5
146,439 - GFF5515 0.56 -0.8
146,439 - GFF5515 0.56 -0.3
146,439 - GFF5515 0.56 -0.5
146,439 - GFF5515 0.56 +0.0
146,439 - GFF5515 0.56 -2.3
146,439 - GFF5515 0.56 -0.1
146,439 - GFF5515 0.56 +0.5
146,453 + GFF5515 0.57 -0.8

Or see this region's nucleotide sequence