Strain Fitness in Variovorax sp. SCN45 around GFF5513

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
142,627	+		GFF5511	0.84	+0.8
142,627	+		GFF5511	0.84	+0.4
142,628	-		GFF5511	0.85	+0.5
142,628	-		GFF5511	0.85	+0.2
142,793	+				+0.7
142,793	+				+0.4
142,794	-				+0.1
142,831	+				-0.2
142,831	+				+0.8
142,831	+				-0.2
142,831	+				+0.2
142,831	+				-1.2
142,832	-				+1.8
142,832	-				+1.2
142,832	-				+0.8
142,832	-				+0.2
142,832	-				-1.3
142,832	-				+0.8
142,832	-				-0.2
142,956	+		GFF5512	0.27	+0.2
142,957	-		GFF5512	0.27	-2.0
143,109	+		GFF5512	0.55	-0.8
143,109	+		GFF5512	0.55	-1.2
143,109	+		GFF5512	0.55	-0.8
143,109	+		GFF5512	0.55	-1.3
143,109	+		GFF5512	0.55	-2.3
143,109	+		GFF5512	0.55	-2.6
143,109	+		GFF5512	0.55	-2.0
143,109	+		GFF5512	0.55	-0.5
143,110	-		GFF5512	0.55	+0.2
143,110	-		GFF5512	0.55	+0.2
143,459	+				-1.5
143,459	+				-0.5
143,534	+		GFF5513	0.15	-1.5
143,534	+		GFF5513	0.15	+0.2
144,107	+		GFF5513	0.63	-0.2
144,107	+		GFF5513	0.63	-1.2
144,107	+		GFF5513	0.63	-1.6
144,107	+		GFF5513	0.63	-1.9
144,107	+		GFF5513	0.63	-0.2
144,200	+		GFF5513	0.71	-1.5
144,200	+		GFF5513	0.71	-0.5
144,404	+		GFF5513	0.88	-1.0
144,404	+		GFF5513	0.88	-1.6
144,404	+		GFF5513	0.88	-0.2
144,405	-		GFF5513	0.88	-1.5