Strain Fitness in Variovorax sp. SCN45 around GFF5464

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5462 and GFF5463 overlap by 4 nucleotidesGFF5463 and GFF5464 overlap by 8 nucleotidesGFF5464 and GFF5465 overlap by 4 nucleotides GFF5462 - Cytosine deaminase (EC 3.5.4.1), at 92,580 to 93,776 GFF5462 GFF5463 - RidA/YER057c/UK114 superfamily protein, at 93,773 to 94,240 GFF5463 GFF5464 - Transcriptional regulator, AcrR family, at 94,233 to 94,919 GFF5464 GFF5465 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 94,916 to 95,884 GFF5465 Position (kb) 94 95Strain fitness (log2 ratio) -2 -1 0 1 2 3at 93.397 kb on - strand, within GFF5462at 93.397 kb on - strand, within GFF5462at 93.397 kb on - strand, within GFF5462at 93.513 kb on + strand, within GFF5462at 93.513 kb on + strand, within GFF5462at 93.513 kb on + strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.514 kb on - strand, within GFF5462at 93.519 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.528 kb on + strand, within GFF5462at 93.529 kb on - strand, within GFF5462at 93.682 kb on + strandat 93.682 kb on + strandat 93.683 kb on - strandat 93.683 kb on - strandat 93.683 kb on - strandat 93.800 kb on + strandat 93.800 kb on + strandat 93.800 kb on + strandat 93.800 kb on + strandat 93.800 kb on + strandat 93.801 kb on - strandat 93.801 kb on - strandat 93.801 kb on - strandat 93.801 kb on - strandat 93.801 kb on - strandat 93.888 kb on - strand, within GFF5463at 94.070 kb on + strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.071 kb on - strand, within GFF5463at 94.092 kb on - strand, within GFF5463at 94.092 kb on - strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.100 kb on + strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.101 kb on - strand, within GFF5463at 94.125 kb on - strand, within GFF5463at 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.214 kb on + strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.215 kb on - strandat 94.234 kb on + strandat 94.234 kb on + strandat 94.235 kb on - strandat 94.235 kb on - strandat 94.235 kb on - strandat 94.285 kb on + strandat 94.286 kb on - strandat 94.328 kb on - strand, within GFF5464at 94.328 kb on - strand, within GFF5464at 94.330 kb on + strand, within GFF5464at 94.330 kb on + strand, within GFF5464at 94.357 kb on + strand, within GFF5464at 94.357 kb on + strand, within GFF5464at 94.358 kb on - strand, within GFF5464at 94.358 kb on - strand, within GFF5464at 94.443 kb on + strand, within GFF5464at 94.444 kb on - strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.699 kb on + strand, within GFF5464at 94.700 kb on - strand, within GFF5464at 94.700 kb on - strand, within GFF5464at 94.700 kb on - strand, within GFF5464at 94.700 kb on - strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.702 kb on + strand, within GFF5464at 94.703 kb on - strand, within GFF5464at 94.703 kb on - strand, within GFF5464at 94.703 kb on - strand, within GFF5464at 94.825 kb on + strand, within GFF5464at 94.826 kb on - strand, within GFF5464at 95.037 kb on - strand, within GFF5465at 95.082 kb on + strand, within GFF5465at 95.215 kb on - strand, within GFF5465at 95.215 kb on - strand, within GFF5465at 95.215 kb on - strand, within GFF5465at 95.270 kb on + strand, within GFF5465at 95.270 kb on + strand, within GFF5465at 95.270 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.301 kb on + strand, within GFF5465at 95.302 kb on - strand, within GFF5465at 95.302 kb on - strand, within GFF5465at 95.302 kb on - strand, within GFF5465at 95.302 kb on - strand, within GFF5465at 95.682 kb on + strand, within GFF5465at 95.683 kb on - strand, within GFF5465at 95.721 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.775 kb on + strand, within GFF5465at 95.776 kb on - strand, within GFF5465

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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93,397 - GFF5462 0.68 -0.5
93,397 - GFF5462 0.68 -0.1
93,397 - GFF5462 0.68 -0.1
93,513 + GFF5462 0.78 -0.7
93,513 + GFF5462 0.78 -0.5
93,513 + GFF5462 0.78 -0.5
93,514 - GFF5462 0.78 -0.5
93,514 - GFF5462 0.78 -1.0
93,514 - GFF5462 0.78 -1.2
93,514 - GFF5462 0.78 +0.2
93,514 - GFF5462 0.78 +0.4
93,514 - GFF5462 0.78 -0.3
93,514 - GFF5462 0.78 -0.9
93,514 - GFF5462 0.78 +0.7
93,514 - GFF5462 0.78 +2.6
93,514 - GFF5462 0.78 +0.1
93,519 + GFF5462 0.78 -0.6
93,528 + GFF5462 0.79 +1.1
93,528 + GFF5462 0.79 -1.8
93,528 + GFF5462 0.79 -0.0
93,528 + GFF5462 0.79 -0.0
93,528 + GFF5462 0.79 -0.3
93,528 + GFF5462 0.79 -1.3
93,528 + GFF5462 0.79 +0.7
93,528 + GFF5462 0.79 +0.2
93,528 + GFF5462 0.79 +0.2
93,529 - GFF5462 0.79 +0.5
93,682 + +1.2
93,682 + -0.5
93,683 - +0.0
93,683 - +0.2
93,683 - +0.1
93,800 + +1.0
93,800 + -0.1
93,800 + -0.4
93,800 + +0.2
93,800 + +1.0
93,801 - -1.9
93,801 - -0.4
93,801 - -0.5
93,801 - -0.6
93,801 - -0.5
93,888 - GFF5463 0.25 -1.2
94,070 + GFF5463 0.63 +0.8
94,071 - GFF5463 0.64 -0.3
94,071 - GFF5463 0.64 -0.9
94,071 - GFF5463 0.64 +0.1
94,071 - GFF5463 0.64 -0.4
94,071 - GFF5463 0.64 -0.8
94,092 - GFF5463 0.68 -0.3
94,092 - GFF5463 0.68 +0.3
94,100 + GFF5463 0.70 -0.2
94,100 + GFF5463 0.70 +0.8
94,100 + GFF5463 0.70 +2.2
94,100 + GFF5463 0.70 +0.1
94,100 + GFF5463 0.70 +0.0
94,100 + GFF5463 0.70 -0.3
94,100 + GFF5463 0.70 -0.4
94,101 - GFF5463 0.70 -0.3
94,101 - GFF5463 0.70 -0.2
94,101 - GFF5463 0.70 -1.4
94,101 - GFF5463 0.70 +0.2
94,101 - GFF5463 0.70 -0.4
94,101 - GFF5463 0.70 -1.4
94,101 - GFF5463 0.70 -0.6
94,125 - GFF5463 0.75 +0.2
94,214 + -0.8
94,214 + -0.2
94,214 + +1.6
94,214 + +1.3
94,214 + +0.0
94,214 + +0.1
94,214 + -0.9
94,214 + +0.1
94,214 + +1.4
94,214 + -0.3
94,214 + +0.1
94,214 + -0.2
94,215 - -0.3
94,215 - -0.6
94,215 - -1.0
94,215 - +0.2
94,215 - +1.4
94,215 - +0.7
94,215 - +0.2
94,215 - +0.7
94,215 - +0.6
94,215 - -0.2
94,215 - +0.6
94,215 - -0.9
94,234 + +0.2
94,234 + -0.8
94,235 - -0.1
94,235 - -0.0
94,235 - -0.5
94,285 + -1.3
94,286 - +0.3
94,328 - GFF5464 0.14 +0.5
94,328 - GFF5464 0.14 +1.1
94,330 + GFF5464 0.14 +0.1
94,330 + GFF5464 0.14 +1.8
94,357 + GFF5464 0.18 +0.1
94,357 + GFF5464 0.18 -0.1
94,358 - GFF5464 0.18 +0.4
94,358 - GFF5464 0.18 +0.8
94,443 + GFF5464 0.31 +0.4
94,444 - GFF5464 0.31 +0.6
94,699 + GFF5464 0.68 +1.4
94,699 + GFF5464 0.68 +0.1
94,699 + GFF5464 0.68 +0.2
94,699 + GFF5464 0.68 +1.6
94,699 + GFF5464 0.68 +1.1
94,699 + GFF5464 0.68 +0.4
94,699 + GFF5464 0.68 -0.5
94,700 - GFF5464 0.68 +2.8
94,700 - GFF5464 0.68 +0.2
94,700 - GFF5464 0.68 +1.7
94,700 - GFF5464 0.68 +1.2
94,702 + GFF5464 0.68 +0.5
94,702 + GFF5464 0.68 +1.0
94,702 + GFF5464 0.68 +0.5
94,702 + GFF5464 0.68 +1.3
94,702 + GFF5464 0.68 +2.2
94,703 - GFF5464 0.68 +0.0
94,703 - GFF5464 0.68 -0.1
94,703 - GFF5464 0.68 +1.2
94,825 + GFF5464 0.86 +0.1
94,826 - GFF5464 0.86 -0.2
95,037 - GFF5465 0.12 -0.6
95,082 + GFF5465 0.17 +0.3
95,215 - GFF5465 0.31 +0.2
95,215 - GFF5465 0.31 +0.5
95,215 - GFF5465 0.31 +0.3
95,270 + GFF5465 0.37 -0.1
95,270 + GFF5465 0.37 +0.3
95,270 + GFF5465 0.37 +0.2
95,301 + GFF5465 0.40 +0.0
95,301 + GFF5465 0.40 +0.5
95,301 + GFF5465 0.40 +0.1
95,301 + GFF5465 0.40 +0.8
95,301 + GFF5465 0.40 +1.3
95,301 + GFF5465 0.40 +1.8
95,301 + GFF5465 0.40 -0.8
95,301 + GFF5465 0.40 +0.3
95,301 + GFF5465 0.40 +0.9
95,301 + GFF5465 0.40 +0.2
95,301 + GFF5465 0.40 +0.4
95,301 + GFF5465 0.40 +0.7
95,302 - GFF5465 0.40 +0.2
95,302 - GFF5465 0.40 +1.0
95,302 - GFF5465 0.40 +0.6
95,302 - GFF5465 0.40 +1.0
95,682 + GFF5465 0.79 -0.1
95,683 - GFF5465 0.79 +0.4
95,721 + GFF5465 0.83 -0.0
95,775 + GFF5465 0.89 -0.5
95,775 + GFF5465 0.89 +0.2
95,775 + GFF5465 0.89 +1.5
95,776 - GFF5465 0.89 -0.3

Or see this region's nucleotide sequence