Strain Fitness in Variovorax sp. SCN45 around GFF5447

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
76,925	+		GFF5446	0.54	-0.5
76,925	+		GFF5446	0.54	+0.8
76,926	-		GFF5446	0.54	+0.1
77,234	+		GFF5446	0.69	+0.2
77,234	+		GFF5446	0.69	+0.1
77,235	-		GFF5446	0.69	+2.6
77,235	-		GFF5446	0.69	-1.1
77,235	-		GFF5446	0.69	+0.3
77,235	-		GFF5446	0.69	-0.6
77,235	-		GFF5446	0.69	-0.8
77,235	-		GFF5446	0.69	-1.2
77,235	-		GFF5446	0.69	-0.0
77,949	+				-0.4
77,949	+				+0.4
78,544	+				+0.7
78,544	+				-0.2
78,544	+				-0.9
78,544	+				-1.8
78,544	+				+0.8
78,544	+				+0.6
78,545	-				+1.2
78,545	-				-0.5
78,545	-				-0.5
78,545	-				+0.0
78,545	-				-0.1
78,545	-				+1.1
78,545	-				-0.0
78,545	-				+0.1
78,545	-				+0.6
78,545	-				-0.2
79,116	-				+0.4
79,138	+				+0.1
79,138	+				+1.8
79,138	+				+0.0
79,138	+				+0.0
79,138	+				+0.1
79,139	-				+1.4
79,139	-				-0.5
79,139	-				-0.2
79,139	-				+1.4
79,139	-				+1.2
79,139	-				-2.2
79,139	-				+0.1
79,139	-				-0.8
79,142	+				+0.4
79,142	+				-0.6
79,142	+				+1.1
79,142	+				-0.3
79,142	+				-0.5
79,142	+				+0.5
79,142	+				+0.1
79,142	+				+0.7
79,142	+				-0.9
79,142	+				-0.9
79,142	+				+0.1
79,142	+				-0.4
79,142	+				+0.4
79,142	+				-0.5
79,142	+				+0.0
79,142	+				+0.8
79,142	+				-0.2
79,143	-				-1.3
79,143	-				-1.2
79,143	-				-0.4
79,143	-				+0.3
79,143	-				-0.7
79,143	-				-0.2
79,143	-				-1.0
79,143	-				-1.3
79,143	-				+0.2
79,173	+				+0.3
79,174	-				+0.8
79,174	-				-0.5
79,397	+		GFF5449	0.23	+0.2
79,397	+		GFF5449	0.23	+0.2
79,397	+		GFF5449	0.23	-0.3
79,398	-		GFF5449	0.23	-1.3
79,398	-		GFF5449	0.23	+0.6
79,398	-		GFF5449	0.23	+0.2
79,398	-		GFF5449	0.23	-0.3
79,398	-		GFF5449	0.23	-0.4
79,398	-		GFF5449	0.23	+1.8
79,398	-		GFF5449	0.23	-0.9
79,398	-		GFF5449	0.23	+0.7