Strain Fitness in Variovorax sp. SCN45 around GFF5406

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5405 and GFF5406 are separated by 10 nucleotidesGFF5406 and GFF5407 are separated by 119 nucleotidesGFF5407 and GFF5408 are separated by 26 nucleotides GFF5405 - Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5), at 28,741 to 29,907 GFF5405 GFF5406 - Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5), at 29,918 to 30,811 GFF5406 GFF5407 - Membrane protein TerC, possibly involved in tellurium resistance, at 30,931 to 31,614 GFF5407 GFF5408 - Protein serine/threonine phosphatase PrpC, regulation of stationary phase, at 31,641 to 32,450 GFF5408 Position (kb) 29 30 31Strain fitness (log2 ratio) -2 -1 0 1 2at 29.905 kb on + strandat 29.905 kb on + strandat 29.905 kb on + strandat 29.905 kb on + strandat 29.905 kb on + strandat 29.905 kb on + strandat 30.809 kb on + strandat 30.809 kb on + strandat 30.809 kb on + strandat 30.809 kb on + strandat 30.810 kb on - strandat 30.810 kb on - strandat 30.810 kb on - strandat 30.810 kb on - strandat 30.810 kb on - strandat 30.810 kb on - strandat 30.868 kb on + strandat 30.868 kb on + strandat 30.869 kb on - strandat 30.934 kb on + strandat 30.962 kb on + strandat 30.962 kb on + strandat 30.962 kb on + strandat 30.962 kb on + strandat 30.963 kb on - strandat 30.963 kb on - strandat 31.070 kb on + strand, within GFF5407at 31.070 kb on + strand, within GFF5407at 31.070 kb on + strand, within GFF5407at 31.070 kb on + strand, within GFF5407at 31.071 kb on - strand, within GFF5407at 31.071 kb on - strand, within GFF5407at 31.071 kb on - strand, within GFF5407at 31.147 kb on + strand, within GFF5407at 31.147 kb on + strand, within GFF5407at 31.147 kb on + strand, within GFF5407at 31.147 kb on + strand, within GFF5407at 31.147 kb on + strand, within GFF5407at 31.147 kb on + strand, within GFF5407at 31.147 kb on + strand, within GFF5407at 31.148 kb on - strand, within GFF5407at 31.148 kb on - strand, within GFF5407at 31.148 kb on - strand, within GFF5407at 31.237 kb on + strand, within GFF5407at 31.237 kb on + strand, within GFF5407at 31.237 kb on + strand, within GFF5407at 31.237 kb on + strand, within GFF5407at 31.237 kb on + strand, within GFF5407at 31.237 kb on + strand, within GFF5407at 31.237 kb on + strand, within GFF5407at 31.238 kb on - strand, within GFF5407at 31.238 kb on - strand, within GFF5407at 31.238 kb on - strand, within GFF5407at 31.238 kb on - strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.392 kb on + strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.393 kb on - strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.531 kb on + strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.532 kb on - strand, within GFF5407at 31.800 kb on + strand, within GFF5408at 31.800 kb on + strand, within GFF5408at 31.800 kb on + strand, within GFF5408at 31.800 kb on + strand, within GFF5408at 31.800 kb on + strand, within GFF5408at 31.800 kb on + strand, within GFF5408at 31.800 kb on + strand, within GFF5408at 31.800 kb on + strand, within GFF5408at 31.801 kb on - strand, within GFF5408at 31.801 kb on - strand, within GFF5408at 31.801 kb on - strand, within GFF5408at 31.801 kb on - strand, within GFF5408at 31.801 kb on - strand, within GFF5408at 31.801 kb on - strand, within GFF5408

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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29,905 + +0.7
29,905 + -0.1
29,905 + -0.2
29,905 + -0.0
29,905 + +0.0
29,905 + +0.8
30,809 + -0.4
30,809 + -0.1
30,809 + +0.6
30,809 + +0.5
30,810 - -1.3
30,810 - +0.0
30,810 - +0.1
30,810 - +0.0
30,810 - -1.0
30,810 - +0.2
30,868 + -0.2
30,868 + +0.3
30,869 - +0.0
30,934 + +0.2
30,962 + -0.6
30,962 + -0.3
30,962 + +0.2
30,962 + -1.0
30,963 - -0.6
30,963 - -0.2
31,070 + GFF5407 0.20 +0.5
31,070 + GFF5407 0.20 -1.3
31,070 + GFF5407 0.20 +0.7
31,070 + GFF5407 0.20 -0.5
31,071 - GFF5407 0.20 -0.8
31,071 - GFF5407 0.20 +1.4
31,071 - GFF5407 0.20 -1.0
31,147 + GFF5407 0.32 +0.8
31,147 + GFF5407 0.32 +0.6
31,147 + GFF5407 0.32 +0.5
31,147 + GFF5407 0.32 -0.0
31,147 + GFF5407 0.32 -0.1
31,147 + GFF5407 0.32 -0.5
31,147 + GFF5407 0.32 +0.1
31,148 - GFF5407 0.32 +0.2
31,148 - GFF5407 0.32 -0.2
31,148 - GFF5407 0.32 +0.2
31,237 + GFF5407 0.45 +1.1
31,237 + GFF5407 0.45 -0.2
31,237 + GFF5407 0.45 -0.9
31,237 + GFF5407 0.45 +0.7
31,237 + GFF5407 0.45 -0.0
31,237 + GFF5407 0.45 +0.2
31,237 + GFF5407 0.45 +0.5
31,238 - GFF5407 0.45 -0.3
31,238 - GFF5407 0.45 +0.2
31,238 - GFF5407 0.45 +0.0
31,238 - GFF5407 0.45 +0.7
31,392 + GFF5407 0.67 -0.6
31,392 + GFF5407 0.67 -0.0
31,392 + GFF5407 0.67 +0.2
31,392 + GFF5407 0.67 -0.6
31,392 + GFF5407 0.67 +0.4
31,392 + GFF5407 0.67 -2.1
31,392 + GFF5407 0.67 -0.1
31,392 + GFF5407 0.67 -1.2
31,392 + GFF5407 0.67 -1.1
31,392 + GFF5407 0.67 -0.3
31,392 + GFF5407 0.67 -0.6
31,392 + GFF5407 0.67 -0.1
31,392 + GFF5407 0.67 +0.9
31,392 + GFF5407 0.67 +0.2
31,392 + GFF5407 0.67 +1.1
31,392 + GFF5407 0.67 +0.3
31,392 + GFF5407 0.67 +0.4
31,392 + GFF5407 0.67 -1.4
31,392 + GFF5407 0.67 -0.2
31,393 - GFF5407 0.68 -0.5
31,393 - GFF5407 0.68 +0.6
31,393 - GFF5407 0.68 +2.2
31,393 - GFF5407 0.68 -1.5
31,393 - GFF5407 0.68 +0.2
31,393 - GFF5407 0.68 -0.1
31,393 - GFF5407 0.68 -0.9
31,393 - GFF5407 0.68 -2.1
31,393 - GFF5407 0.68 -0.3
31,393 - GFF5407 0.68 +1.9
31,393 - GFF5407 0.68 -0.8
31,393 - GFF5407 0.68 +0.8
31,393 - GFF5407 0.68 -0.3
31,393 - GFF5407 0.68 -0.3
31,393 - GFF5407 0.68 +0.4
31,393 - GFF5407 0.68 -0.2
31,393 - GFF5407 0.68 -0.3
31,531 + GFF5407 0.88 -0.4
31,531 + GFF5407 0.88 -0.3
31,531 + GFF5407 0.88 +0.7
31,531 + GFF5407 0.88 +1.1
31,531 + GFF5407 0.88 -0.3
31,531 + GFF5407 0.88 +0.2
31,531 + GFF5407 0.88 -0.2
31,531 + GFF5407 0.88 -0.1
31,531 + GFF5407 0.88 +0.0
31,531 + GFF5407 0.88 +0.4
31,531 + GFF5407 0.88 +0.0
31,531 + GFF5407 0.88 -0.9
31,532 - GFF5407 0.88 -0.8
31,532 - GFF5407 0.88 +0.0
31,532 - GFF5407 0.88 +0.5
31,532 - GFF5407 0.88 +1.8
31,532 - GFF5407 0.88 -0.3
31,532 - GFF5407 0.88 +0.3
31,532 - GFF5407 0.88 -0.6
31,532 - GFF5407 0.88 +0.6
31,532 - GFF5407 0.88 -0.9
31,532 - GFF5407 0.88 +1.1
31,532 - GFF5407 0.88 -0.0
31,532 - GFF5407 0.88 -0.5
31,532 - GFF5407 0.88 -0.4
31,532 - GFF5407 0.88 -0.2
31,800 + GFF5408 0.20 -0.5
31,800 + GFF5408 0.20 -0.8
31,800 + GFF5408 0.20 +0.4
31,800 + GFF5408 0.20 +0.8
31,800 + GFF5408 0.20 -0.3
31,800 + GFF5408 0.20 +0.2
31,800 + GFF5408 0.20 +0.8
31,800 + GFF5408 0.20 -0.8
31,801 - GFF5408 0.20 +0.0
31,801 - GFF5408 0.20 +0.0
31,801 - GFF5408 0.20 +0.5
31,801 - GFF5408 0.20 -0.2
31,801 - GFF5408 0.20 +0.2
31,801 - GFF5408 0.20 -0.2

Or see this region's nucleotide sequence