Strain Fitness in Variovorax sp. SCN45 around GFF54

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
68,286	+		GFF53	0.84	-0.2
68,287	-		GFF53	0.84	-1.1
68,287	-		GFF53	0.84	+0.4
68,319	+		GFF53	0.84	-1.0
68,320	-		GFF53	0.84	+0.5
68,547	+		GFF53	0.89	+1.6
68,547	+		GFF53	0.89	-1.4
68,548	-		GFF53	0.89	+0.1
68,548	-		GFF53	0.89	-0.4
68,562	+		GFF53	0.89	+1.5
68,562	+		GFF53	0.89	-0.4
68,562	+		GFF53	0.89	-0.1
68,563	-		GFF53	0.89	-0.0
68,563	-		GFF53	0.89	-0.1
68,563	-		GFF53	0.89	+0.3
68,599	-		GFF53	0.90	-2.1
68,599	-		GFF53	0.90	+0.5
68,599	-		GFF53	0.90	-0.3
68,649	+				-0.5
68,649	+				+0.0
68,649	+				+0.9
68,649	+				-0.3
68,649	+				-0.1
68,650	-				-0.2
68,686	-				-1.8
68,686	-				-0.5
68,686	-				-0.5
68,947	-				-0.6
70,057	+		GFF55	0.25	-0.7
70,058	-		GFF55	0.25	+0.1
70,335	+		GFF55	0.59	-0.6
70,570	+		GFF55	0.88	-0.3
70,570	+		GFF55	0.88	-0.2
70,570	+		GFF55	0.88	+0.1
70,570	+		GFF55	0.88	-0.8
70,570	+		GFF55	0.88	-1.1
70,570	+		GFF55	0.88	-1.1
70,571	-		GFF55	0.88	+1.0