Strain Fitness in Variovorax sp. SCN45 around GFF5345

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5343 and GFF5344 overlap by 4 nucleotidesGFF5344 and GFF5345 are separated by 20 nucleotidesGFF5345 and GFF5346 are separated by 32 nucleotidesGFF5346 and GFF5347 are separated by 10 nucleotides GFF5343 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 221,469 to 222,761 GFF5343 GFF5344 - ATP phosphoribosyltransferase (EC 2.4.2.17) => HisGs, at 222,758 to 223,399 GFF5344 GFF5345 - Histidinol dehydrogenase (EC 1.1.1.23), at 223,420 to 224,742 GFF5345 GFF5346 - Putative outer membrane lipoprotein, at 224,775 to 225,587 GFF5346 GFF5347 - hypothetical protein, at 225,598 to 225,948 GFF5347 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2at 222.669 kb on + strandat 222.669 kb on + strandat 222.669 kb on + strandat 222.669 kb on + strandat 222.669 kb on + strandat 222.669 kb on + strandat 222.669 kb on + strandat 222.669 kb on + strandat 222.669 kb on + strandat 222.669 kb on + strandat 222.670 kb on - strandat 222.670 kb on - strandat 222.670 kb on - strandat 224.733 kb on + strandat 224.733 kb on + strandat 224.734 kb on - strandat 224.734 kb on - strandat 224.790 kb on + strandat 224.790 kb on + strandat 224.790 kb on + strandat 224.791 kb on - strandat 224.791 kb on - strandat 225.015 kb on + strand, within GFF5346at 225.015 kb on + strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.016 kb on - strand, within GFF5346at 225.208 kb on - strand, within GFF5346at 225.208 kb on - strand, within GFF5346at 225.243 kb on + strand, within GFF5346at 225.243 kb on + strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.244 kb on - strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.287 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.315 kb on + strand, within GFF5346at 225.316 kb on - strand, within GFF5346at 225.316 kb on - strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.411 kb on + strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.412 kb on - strand, within GFF5346at 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.558 kb on + strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.559 kb on - strandat 225.712 kb on + strand, within GFF5347at 225.712 kb on + strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.713 kb on - strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.721 kb on + strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.722 kb on - strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.724 kb on + strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347at 225.725 kb on - strand, within GFF5347

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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222,669 + -0.7
222,669 + +0.3
222,669 + +0.3
222,669 + -0.1
222,669 + -0.7
222,669 + -0.7
222,669 + +0.0
222,669 + -1.2
222,669 + +0.0
222,669 + +0.5
222,670 - +0.6
222,670 - -0.3
222,670 - -1.9
224,733 + -0.2
224,733 + -0.1
224,734 - +0.6
224,734 - +1.6
224,790 + +0.4
224,790 + -0.6
224,790 + -1.0
224,791 - +0.5
224,791 - -0.9
225,015 + GFF5346 0.30 -0.4
225,015 + GFF5346 0.30 -0.4
225,016 - GFF5346 0.30 -1.6
225,016 - GFF5346 0.30 -0.1
225,016 - GFF5346 0.30 +0.3
225,208 - GFF5346 0.53 -0.4
225,208 - GFF5346 0.53 +0.1
225,243 + GFF5346 0.58 -1.7
225,243 + GFF5346 0.58 +0.2
225,244 - GFF5346 0.58 +1.3
225,244 - GFF5346 0.58 +0.4
225,244 - GFF5346 0.58 -0.0
225,244 - GFF5346 0.58 +0.5
225,244 - GFF5346 0.58 -0.2
225,244 - GFF5346 0.58 -0.2
225,287 + GFF5346 0.63 +1.0
225,287 + GFF5346 0.63 -0.4
225,287 + GFF5346 0.63 +1.6
225,315 + GFF5346 0.66 -0.6
225,315 + GFF5346 0.66 +0.2
225,315 + GFF5346 0.66 -1.5
225,315 + GFF5346 0.66 -0.2
225,316 - GFF5346 0.67 -1.1
225,316 - GFF5346 0.67 -0.7
225,411 + GFF5346 0.78 +0.6
225,411 + GFF5346 0.78 +1.1
225,411 + GFF5346 0.78 -0.4
225,411 + GFF5346 0.78 -1.2
225,412 - GFF5346 0.78 -1.6
225,412 - GFF5346 0.78 -0.9
225,412 - GFF5346 0.78 -0.5
225,412 - GFF5346 0.78 -0.7
225,412 - GFF5346 0.78 +0.4
225,558 + -1.6
225,558 + +0.6
225,558 + +0.2
225,558 + -1.4
225,558 + +0.4
225,558 + +0.1
225,559 - +0.8
225,559 - +2.1
225,559 - -1.1
225,559 - +0.2
225,712 + GFF5347 0.32 +0.9
225,712 + GFF5347 0.32 +0.1
225,713 - GFF5347 0.33 +0.3
225,713 - GFF5347 0.33 +0.5
225,713 - GFF5347 0.33 -0.3
225,713 - GFF5347 0.33 -0.8
225,713 - GFF5347 0.33 -0.6
225,713 - GFF5347 0.33 -0.0
225,721 + GFF5347 0.35 +1.6
225,721 + GFF5347 0.35 -1.1
225,721 + GFF5347 0.35 +0.1
225,722 - GFF5347 0.35 -0.7
225,722 - GFF5347 0.35 -0.2
225,722 - GFF5347 0.35 +1.9
225,722 - GFF5347 0.35 +0.9
225,722 - GFF5347 0.35 +0.2
225,724 + GFF5347 0.36 -0.7
225,724 + GFF5347 0.36 -2.4
225,724 + GFF5347 0.36 +0.6
225,724 + GFF5347 0.36 +0.2
225,724 + GFF5347 0.36 -0.2
225,724 + GFF5347 0.36 -0.9
225,724 + GFF5347 0.36 -0.4
225,724 + GFF5347 0.36 -1.0
225,725 - GFF5347 0.36 +0.8
225,725 - GFF5347 0.36 +0.2
225,725 - GFF5347 0.36 -0.6
225,725 - GFF5347 0.36 -0.3
225,725 - GFF5347 0.36 -1.5
225,725 - GFF5347 0.36 -0.6
225,725 - GFF5347 0.36 -0.4

Or see this region's nucleotide sequence