Strain Fitness in Variovorax sp. SCN45 around GFF5326

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5325 and GFF5326 overlap by 4 nucleotidesGFF5326 and GFF5327 overlap by 4 nucleotides GFF5325 - 3-dehydroquinate synthase (EC 4.2.3.4), at 202,447 to 203,556 GFF5325 GFF5326 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), at 203,553 to 204,683 GFF5326 GFF5327 - Uncharacterized MFS-type transporter, at 204,680 to 205,936 GFF5327 Position (kb) 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2at 202.618 kb on + strand, within GFF5325at 202.826 kb on - strand, within GFF5325at 202.826 kb on - strand, within GFF5325at 202.946 kb on - strand, within GFF5325at 203.047 kb on + strand, within GFF5325at 203.047 kb on + strand, within GFF5325at 203.047 kb on + strand, within GFF5325at 203.248 kb on + strand, within GFF5325at 203.414 kb on - strand, within GFF5325at 203.568 kb on + strandat 203.568 kb on + strandat 203.568 kb on + strandat 203.568 kb on + strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.569 kb on - strandat 203.692 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 203.971 kb on - strand, within GFF5326at 204.062 kb on + strand, within GFF5326at 204.063 kb on - strand, within GFF5326at 204.144 kb on + strand, within GFF5326at 204.144 kb on + strand, within GFF5326at 204.145 kb on - strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.282 kb on + strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.283 kb on - strand, within GFF5326at 204.318 kb on + strand, within GFF5326at 204.318 kb on + strand, within GFF5326at 204.319 kb on - strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.537 kb on + strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.538 kb on - strand, within GFF5326at 204.571 kb on - strandat 204.571 kb on - strandat 204.571 kb on - strandat 204.609 kb on + strandat 204.609 kb on + strandat 204.610 kb on - strandat 204.610 kb on - strandat 204.610 kb on - strandat 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.931 kb on + strand, within GFF5327at 204.932 kb on - strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.008 kb on + strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.009 kb on - strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.130 kb on + strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.131 kb on - strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.379 kb on + strand, within GFF5327at 205.380 kb on - strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.424 kb on + strand, within GFF5327at 205.425 kb on - strand, within GFF5327at 205.425 kb on - strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.649 kb on + strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327at 205.650 kb on - strand, within GFF5327

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
202,618 + GFF5325 0.15 -1.0
202,826 - GFF5325 0.34 -0.7
202,826 - GFF5325 0.34 -1.2
202,946 - GFF5325 0.45 -1.0
203,047 + GFF5325 0.54 -1.9
203,047 + GFF5325 0.54 -1.2
203,047 + GFF5325 0.54 +1.6
203,248 + GFF5325 0.72 -1.2
203,414 - GFF5325 0.87 -1.7
203,568 + -0.6
203,568 + -0.1
203,568 + +1.4
203,568 + -0.5
203,569 - -0.5
203,569 - -0.5
203,569 - -0.5
203,569 - +0.0
203,569 - +0.0
203,569 - -0.4
203,569 - -0.1
203,569 - +0.2
203,692 - GFF5326 0.12 +0.4
203,971 - GFF5326 0.37 -0.7
203,971 - GFF5326 0.37 +0.2
203,971 - GFF5326 0.37 +0.1
204,062 + GFF5326 0.45 -0.4
204,063 - GFF5326 0.45 -0.4
204,144 + GFF5326 0.52 +0.3
204,144 + GFF5326 0.52 -1.9
204,145 - GFF5326 0.52 -1.3
204,282 + GFF5326 0.64 +0.0
204,282 + GFF5326 0.64 +0.1
204,282 + GFF5326 0.64 +0.2
204,283 - GFF5326 0.65 +1.3
204,283 - GFF5326 0.65 -1.2
204,283 - GFF5326 0.65 +1.6
204,318 + GFF5326 0.68 +0.6
204,318 + GFF5326 0.68 -0.5
204,319 - GFF5326 0.68 +0.8
204,537 + GFF5326 0.87 +0.2
204,537 + GFF5326 0.87 -0.1
204,537 + GFF5326 0.87 +0.2
204,537 + GFF5326 0.87 +0.2
204,537 + GFF5326 0.87 +0.1
204,538 - GFF5326 0.87 +0.9
204,538 - GFF5326 0.87 +0.0
204,538 - GFF5326 0.87 -0.2
204,538 - GFF5326 0.87 +0.1
204,571 - -1.2
204,571 - -0.3
204,571 - +0.2
204,609 + +0.4
204,609 + +1.6
204,610 - -0.2
204,610 - -0.9
204,610 - +0.1
204,931 + GFF5327 0.20 +0.6
204,931 + GFF5327 0.20 -0.7
204,931 + GFF5327 0.20 -0.3
204,931 + GFF5327 0.20 -0.1
204,932 - GFF5327 0.20 +1.6
205,008 + GFF5327 0.26 -0.2
205,008 + GFF5327 0.26 -0.0
205,008 + GFF5327 0.26 -0.2
205,008 + GFF5327 0.26 -0.2
205,008 + GFF5327 0.26 -0.7
205,008 + GFF5327 0.26 +0.4
205,009 - GFF5327 0.26 -0.3
205,009 - GFF5327 0.26 -0.4
205,009 - GFF5327 0.26 -1.2
205,130 + GFF5327 0.36 +0.7
205,130 + GFF5327 0.36 +0.0
205,130 + GFF5327 0.36 -2.0
205,130 + GFF5327 0.36 +0.0
205,130 + GFF5327 0.36 -0.4
205,130 + GFF5327 0.36 -0.1
205,130 + GFF5327 0.36 +0.0
205,130 + GFF5327 0.36 +0.4
205,130 + GFF5327 0.36 -0.4
205,130 + GFF5327 0.36 -1.6
205,130 + GFF5327 0.36 -0.8
205,130 + GFF5327 0.36 -0.1
205,130 + GFF5327 0.36 +1.3
205,130 + GFF5327 0.36 +1.6
205,130 + GFF5327 0.36 -0.2
205,130 + GFF5327 0.36 +0.8
205,130 + GFF5327 0.36 +0.6
205,130 + GFF5327 0.36 -1.4
205,130 + GFF5327 0.36 +1.6
205,130 + GFF5327 0.36 -1.7
205,130 + GFF5327 0.36 -0.4
205,130 + GFF5327 0.36 +0.1
205,130 + GFF5327 0.36 -0.2
205,130 + GFF5327 0.36 +0.1
205,130 + GFF5327 0.36 +0.1
205,130 + GFF5327 0.36 -1.1
205,130 + GFF5327 0.36 -0.4
205,131 - GFF5327 0.36 +1.3
205,131 - GFF5327 0.36 +0.4
205,131 - GFF5327 0.36 -0.6
205,131 - GFF5327 0.36 -0.2
205,131 - GFF5327 0.36 -0.6
205,131 - GFF5327 0.36 +1.0
205,131 - GFF5327 0.36 +0.4
205,131 - GFF5327 0.36 +0.3
205,131 - GFF5327 0.36 -1.1
205,131 - GFF5327 0.36 +0.1
205,131 - GFF5327 0.36 +0.3
205,131 - GFF5327 0.36 +0.1
205,131 - GFF5327 0.36 +0.3
205,131 - GFF5327 0.36 +0.2
205,131 - GFF5327 0.36 -0.2
205,131 - GFF5327 0.36 -0.6
205,131 - GFF5327 0.36 -1.1
205,131 - GFF5327 0.36 +0.4
205,131 - GFF5327 0.36 +0.3
205,131 - GFF5327 0.36 -0.4
205,131 - GFF5327 0.36 +1.3
205,379 + GFF5327 0.56 +2.6
205,379 + GFF5327 0.56 -0.2
205,379 + GFF5327 0.56 -0.2
205,379 + GFF5327 0.56 +0.3
205,380 - GFF5327 0.56 +0.4
205,424 + GFF5327 0.59 -0.0
205,424 + GFF5327 0.59 +0.2
205,424 + GFF5327 0.59 +0.2
205,424 + GFF5327 0.59 -0.3
205,424 + GFF5327 0.59 -0.6
205,424 + GFF5327 0.59 -0.8
205,424 + GFF5327 0.59 +2.0
205,424 + GFF5327 0.59 +0.8
205,424 + GFF5327 0.59 -0.5
205,424 + GFF5327 0.59 -1.0
205,425 - GFF5327 0.59 -1.0
205,425 - GFF5327 0.59 +0.0
205,649 + GFF5327 0.77 +1.6
205,649 + GFF5327 0.77 -0.4
205,649 + GFF5327 0.77 +0.8
205,649 + GFF5327 0.77 -0.4
205,649 + GFF5327 0.77 -0.0
205,650 - GFF5327 0.77 +1.6
205,650 - GFF5327 0.77 -0.4
205,650 - GFF5327 0.77 -0.3

Or see this region's nucleotide sequence