Strain Fitness in Variovorax sp. SCN45 around GFF5251

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
114,818	+				+0.4
114,819	-				-0.4
114,820	+				-0.2
114,821	-				-0.3
114,821	-				+0.5
114,821	-				+1.0
114,839	+				+0.2
114,839	+				-0.2
114,839	+				-1.4
114,839	+				-0.5
114,839	+				-0.1
114,840	-				+0.2
114,840	-				+2.8
114,840	-				+0.4
114,840	-				-0.7
114,840	-				+0.2
114,840	-				-0.4
115,619	-		GFF5251	0.45	-2.1
116,011	+		GFF5251	0.75	-0.2
116,330	-				-0.9
116,346	-				+0.2
116,346	-				-0.6
116,488	+				-0.5
116,488	+				-0.2
116,488	+				+0.1
116,488	+				-0.8
116,488	+				-0.6
116,488	+				-0.1
116,488	+				-0.2
116,488	+				-0.1
116,488	+				+0.3
116,488	+				-1.6
116,488	+				+1.2
116,488	+				-0.3
116,488	+				-0.5
116,488	+				-0.4
116,488	+				+0.1
116,488	+				-0.8
116,488	+				+0.2
116,488	+				-0.7
116,488	+				+0.5
116,489	-				-0.2
116,489	-				-0.3
116,489	-				-0.5
116,489	-				-0.7
116,489	-				-0.8
116,489	-				+1.6
116,489	-				-0.4
116,489	-				-1.4
116,489	-				-0.3
116,489	-				-0.1
116,489	-				-1.2
116,489	-				+0.2
116,489	-				+0.0
116,489	-				+0.9
116,529	+				+0.1
116,529	+				+0.2
116,529	+				-0.3
116,529	+				+0.3
116,529	+				-0.2
116,530	-				+0.9
116,530	-				+0.6
116,592	+				+0.3
116,592	+				-0.8
116,592	+				-0.2
116,592	+				+0.1
116,592	+				+0.4
116,600	+				-0.4
116,600	+				+0.0
116,600	+				+0.3
116,600	+				-0.5
116,600	+				-0.5
116,600	+				+1.6
116,600	+				+0.7
116,600	+				+0.2
116,600	+				+0.4
116,600	+				-0.6
116,601	-				-0.5
116,601	-				-0.3
116,601	-				+0.2
116,601	-				-1.1
116,601	-				+0.0
116,601	-				-2.6
116,601	-				-1.6
116,601	-				-0.6
116,867	+		GFF5252	0.36	-0.6
116,867	+		GFF5252	0.36	-0.1
116,867	+		GFF5252	0.36	-0.6
116,867	+		GFF5252	0.36	+0.4
116,867	+		GFF5252	0.36	-0.2
116,867	+		GFF5252	0.36	+0.2
116,868	-		GFF5252	0.36	-0.3
116,868	-		GFF5252	0.36	+0.4
117,170	+		GFF5252	0.67	+0.2
117,170	+		GFF5252	0.67	+0.4
117,170	+		GFF5252	0.67	-2.8
117,170	+		GFF5252	0.67	-0.8
117,170	+		GFF5252	0.67	-0.2
117,170	+		GFF5252	0.67	+0.1
117,170	+		GFF5252	0.67	+0.4
117,170	+		GFF5252	0.67	-0.9
117,171	-		GFF5252	0.67	-0.1
117,171	-		GFF5252	0.67	+0.1
117,171	-		GFF5252	0.67	-0.5
117,171	-		GFF5252	0.67	-0.2
117,171	-		GFF5252	0.67	-0.2
117,171	-		GFF5252	0.67	+0.9
117,171	-		GFF5252	0.67	+0.1
117,171	-		GFF5252	0.67	-0.1
117,171	-		GFF5252	0.67	-0.7
117,171	-		GFF5252	0.67	+0.8