Strain Fitness in Variovorax sp. SCN45 around GFF5176

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
29,949	+		GFF5175	0.76	+0.5
29,949	+		GFF5175	0.76	-0.2
29,949	+		GFF5175	0.76	-1.2
29,949	+		GFF5175	0.76	-0.8
29,949	+		GFF5175	0.76	-1.0
29,949	+		GFF5175	0.76	-0.0
29,949	+		GFF5175	0.76	-0.5
29,950	-		GFF5175	0.76	-0.6
29,950	-		GFF5175	0.76	+0.1
30,076	-		GFF5175	0.79	-0.9
30,076	-		GFF5175	0.79	+0.0
30,076	-		GFF5175	0.79	-0.3
30,076	-		GFF5175	0.79	-0.6
30,126	+		GFF5175	0.81	-1.1
30,126	+		GFF5175	0.81	-0.4
30,127	-		GFF5175	0.81	-0.0
30,127	-		GFF5175	0.81	-0.8
30,186	+		GFF5175	0.82	+0.0
30,187	-		GFF5175	0.82	-0.7
30,187	-		GFF5175	0.82	-0.6
30,573	+				-0.4
30,574	-				-1.0
30,574	-				+0.0
30,574	-				-0.2
30,865	+				+0.3
30,865	+				+1.3
30,865	+				-0.1
30,866	-				-0.5
30,866	-				-0.5
31,113	+				+0.2
31,114	-		GFF5177	0.10	-1.3
31,114	-		GFF5177	0.10	-0.5
31,114	-		GFF5177	0.10	-0.7
31,155	+		GFF5177	0.14	-0.4
31,155	+		GFF5177	0.14	+0.3
31,155	+		GFF5177	0.14	+0.5
31,155	+		GFF5177	0.14	-1.3
31,155	+		GFF5177	0.14	-2.0
31,155	+		GFF5177	0.14	-1.0
31,155	+		GFF5177	0.14	+0.3
31,156	-		GFF5177	0.14	-0.9
31,156	-		GFF5177	0.14	+0.3
31,156	-		GFF5177	0.14	-2.7
31,156	-		GFF5177	0.14	-0.2
31,156	-		GFF5177	0.14	+0.7
31,156	-		GFF5177	0.14	+0.4
31,156	-		GFF5177	0.14	-1.0
31,156	-		GFF5177	0.14	-0.0
31,156	-		GFF5177	0.14	+0.2
31,158	+		GFF5177	0.14	+1.2
31,158	+		GFF5177	0.14	-0.1
31,158	+		GFF5177	0.14	+1.4
31,158	+		GFF5177	0.14	+0.2
31,158	+		GFF5177	0.14	-1.7
31,158	+		GFF5177	0.14	-0.1
31,158	+		GFF5177	0.14	-0.1
31,158	+		GFF5177	0.14	-2.1
31,158	+		GFF5177	0.14	+2.6
31,158	+		GFF5177	0.14	-0.6
31,158	+		GFF5177	0.14	-0.7
31,158	+		GFF5177	0.14	+0.1
31,158	+		GFF5177	0.14	-1.0
31,158	+		GFF5177	0.14	-0.5
31,158	+		GFF5177	0.14	+0.7
31,158	+		GFF5177	0.14	-0.2
31,158	+		GFF5177	0.14	-0.1
31,159	-		GFF5177	0.14	+1.7
31,159	-		GFF5177	0.14	-1.4
31,159	-		GFF5177	0.14	-1.1
31,159	-		GFF5177	0.14	+0.5
31,159	-		GFF5177	0.14	-1.1
31,159	-		GFF5177	0.14	+0.6
31,159	-		GFF5177	0.14	-0.0
31,159	-		GFF5177	0.14	-0.3
31,560	+		GFF5177	0.50	-0.6
31,560	+		GFF5177	0.50	+0.0
31,560	+		GFF5177	0.50	-0.2
31,560	+		GFF5177	0.50	-0.2
31,560	+		GFF5177	0.50	-0.5
31,560	+		GFF5177	0.50	-0.1
31,560	+		GFF5177	0.50	-0.1
31,560	+		GFF5177	0.50	-0.4
31,561	-		GFF5177	0.50	+0.5
31,561	-		GFF5177	0.50	-0.2
31,561	-		GFF5177	0.50	-0.6
31,605	+		GFF5177	0.54	+0.2
31,605	+		GFF5177	0.54	-0.7
31,605	+		GFF5177	0.54	-0.3
31,606	-		GFF5177	0.54	+0.1
31,606	-		GFF5177	0.54	+0.4
31,606	-		GFF5177	0.54	+0.4
31,606	-		GFF5177	0.54	+0.7
31,606	-		GFF5177	0.54	-1.6
31,606	-		GFF5177	0.54	-1.0
31,606	-		GFF5177	0.54	-1.2
31,635	+		GFF5177	0.57	-0.3
31,635	+		GFF5177	0.57	-0.4
31,635	+		GFF5177	0.57	+0.2
31,636	-		GFF5177	0.57	-1.0
31,636	-		GFF5177	0.57	-0.5
31,636	-		GFF5177	0.57	+0.0
31,640	-		GFF5177	0.57	+0.0
31,785	+		GFF5177	0.70	+0.0
31,785	+		GFF5177	0.70	-1.3
31,785	+		GFF5177	0.70	-0.6
31,786	-		GFF5177	0.70	-0.9
31,786	-		GFF5177	0.70	+0.4
31,845	+		GFF5177	0.76	-0.2
31,845	+		GFF5177	0.76	+3.6
31,845	+		GFF5177	0.76	+1.6
31,845	+		GFF5177	0.76	-0.1
31,845	+		GFF5177	0.76	+0.5
31,866	+		GFF5177	0.77	+1.6
31,866	+		GFF5177	0.77	+0.2
31,866	+		GFF5177	0.77	+0.4
31,866	+		GFF5177	0.77	-1.2
31,866	+		GFF5177	0.77	-0.6
31,867	-		GFF5177	0.78	+1.1
31,867	-		GFF5177	0.78	+1.6
31,867	-		GFF5177	0.78	-0.1
31,867	-		GFF5177	0.78	-0.1
31,867	-		GFF5177	0.78	+0.1
31,867	-		GFF5177	0.78	-1.4
31,867	-		GFF5177	0.78	-0.3
31,908	+		GFF5177	0.81	-1.0
31,908	+		GFF5177	0.81	+0.4
31,908	+		GFF5177	0.81	+0.5
31,908	+		GFF5177	0.81	+1.2
31,909	-		GFF5177	0.81	-0.1
31,909	-		GFF5177	0.81	-0.6
31,909	-		GFF5177	0.81	+0.1
31,909	-		GFF5177	0.81	+0.3
31,909	-		GFF5177	0.81	+0.3
31,909	-		GFF5177	0.81	+0.1
31,909	-		GFF5177	0.81	+0.3
31,909	-		GFF5177	0.81	-0.6
31,911	+		GFF5177	0.81	+0.0
31,912	-		GFF5177	0.82	+1.1
31,912	-		GFF5177	0.82	-1.4
31,980	+		GFF5177	0.88	+0.7
31,981	-		GFF5177	0.88	-1.3
31,981	-		GFF5177	0.88	+1.6
31,981	-		GFF5177	0.88	-0.9
31,981	-		GFF5177	0.88	-0.5
31,981	-		GFF5177	0.88	-0.5