Strain Fitness in Variovorax sp. SCN45 around GFF5155

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
6,946	+		GFF5154	0.50	+0.3
6,946	+		GFF5154	0.50	+0.1
6,946	+		GFF5154	0.50	+0.3
6,946	+		GFF5154	0.50	-1.6
6,946	+		GFF5154	0.50	-0.6
6,946	+		GFF5154	0.50	-2.1
6,946	+		GFF5154	0.50	-0.3
6,946	+		GFF5154	0.50	-0.2
6,947	-		GFF5154	0.50	-0.9
6,947	-		GFF5154	0.50	-0.4
6,947	-		GFF5154	0.50	+0.9
6,947	-		GFF5154	0.50	+0.9
7,005	+		GFF5154	0.54	-0.0
7,005	+		GFF5154	0.54	+0.4
7,006	-		GFF5154	0.54	-0.7
7,054	+		GFF5154	0.57	-0.9
7,054	+		GFF5154	0.57	-1.2
7,054	+		GFF5154	0.57	-2.7
7,054	+		GFF5154	0.57	+0.9
7,054	+		GFF5154	0.57	+0.3
7,054	+		GFF5154	0.57	-0.4
7,054	+		GFF5154	0.57	+1.0
7,054	+		GFF5154	0.57	+0.0
7,055	-		GFF5154	0.57	-0.6
7,055	-		GFF5154	0.57	-1.3
7,055	-		GFF5154	0.57	+0.9
7,055	-		GFF5154	0.57	-0.9
7,306	+		GFF5154	0.74	+0.0
7,307	-		GFF5154	0.74	-0.6
7,307	-		GFF5154	0.74	-0.3
7,486	+		GFF5154	0.85	+0.6
7,487	-		GFF5154	0.85	-0.0
7,487	-		GFF5154	0.85	+0.0
7,487	-		GFF5154	0.85	-0.3
7,645	+				-0.1
7,645	+				-0.4
7,646	-				-0.4
7,646	-				-0.5
7,646	-				+0.5
7,646	-				-1.2
7,646	-				+0.8
7,646	-				-0.4
7,667	-				+1.2
7,694	+				-0.1
7,695	-				+1.4
7,748	+				-0.3
7,749	-				-1.4
7,775	+				-1.2
7,775	+				-0.1
7,775	+				-0.2
7,775	+				+1.0
7,776	-				-0.4
7,786	+				+0.5
7,786	+				-0.1
7,786	+				-0.2
7,787	-				-0.0
7,787	-				-1.3
7,787	-				-0.2
7,787	-				-1.0
7,787	-				-1.1
7,787	-				-0.2
7,787	-				+0.4
8,398	+		GFF5156	0.12	-1.2
8,398	+		GFF5156	0.12	-0.7
8,399	-		GFF5156	0.12	-0.4
8,497	+		GFF5156	0.19	-1.4
8,497	+		GFF5156	0.19	-0.3
8,497	+		GFF5156	0.19	-1.8
8,497	+		GFF5156	0.19	-0.2
8,497	+		GFF5156	0.19	-2.1
8,497	+		GFF5156	0.19	+1.4
8,498	-		GFF5156	0.19	-1.4
8,498	-		GFF5156	0.19	-0.7
8,498	-		GFF5156	0.19	-2.0
8,498	-		GFF5156	0.19	+1.0
8,498	-		GFF5156	0.19	-1.2
8,498	-		GFF5156	0.19	-1.5
8,498	-		GFF5156	0.19	-1.2
8,498	-		GFF5156	0.19	-1.3
8,498	-		GFF5156	0.19	-0.1
8,498	-		GFF5156	0.19	-1.0
8,498	-		GFF5156	0.19	-1.7
8,498	-		GFF5156	0.19	-1.3
8,498	-		GFF5156	0.19	-1.7
8,498	-		GFF5156	0.19	+0.1
8,605	+		GFF5156	0.27	-0.6
8,605	+		GFF5156	0.27	-1.4
8,605	+		GFF5156	0.27	-1.3
8,605	+		GFF5156	0.27	-0.4
8,605	+		GFF5156	0.27	-1.7
8,605	+		GFF5156	0.27	-1.1
8,605	+		GFF5156	0.27	-1.7
8,605	+		GFF5156	0.27	+0.6
8,605	+		GFF5156	0.27	-0.5
8,605	+		GFF5156	0.27	-0.3
8,606	-		GFF5156	0.27	-1.4
8,606	-		GFF5156	0.27	-0.7
8,606	-		GFF5156	0.27	-0.8
8,606	-		GFF5156	0.27	-1.2
8,606	-		GFF5156	0.27	-1.5
8,606	-		GFF5156	0.27	-1.0
8,606	-		GFF5156	0.27	+1.9
8,606	-		GFF5156	0.27	-1.7
8,606	-		GFF5156	0.27	-1.7
8,635	+		GFF5156	0.29	-1.3
8,689	+		GFF5156	0.33	-0.9
8,689	+		GFF5156	0.33	-0.7
8,690	-		GFF5156	0.33	-1.3
8,812	+		GFF5156	0.42	-1.3
8,812	+		GFF5156	0.42	-0.3
8,812	+		GFF5156	0.42	-2.9
8,813	-		GFF5156	0.42	-1.2
8,813	-		GFF5156	0.42	-1.4
8,813	-		GFF5156	0.42	-0.4
8,813	-		GFF5156	0.42	-2.9
8,854	+		GFF5156	0.45	-2.0
8,855	-		GFF5156	0.45	-1.5
8,875	+		GFF5156	0.46	-0.5
8,875	+		GFF5156	0.46	-1.7
8,875	+		GFF5156	0.46	-0.9
8,875	+		GFF5156	0.46	+0.6
8,875	+		GFF5156	0.46	-2.3
8,875	+		GFF5156	0.46	+1.6
8,875	+		GFF5156	0.46	-1.4
8,875	+		GFF5156	0.46	-1.7
8,875	+		GFF5156	0.46	+0.6
8,875	+		GFF5156	0.46	-1.0
8,875	+		GFF5156	0.46	-1.0
8,875	+		GFF5156	0.46	-0.7
8,875	+		GFF5156	0.46	-1.4
8,875	+		GFF5156	0.46	-1.4
8,875	+		GFF5156	0.46	+1.0
8,875	+		GFF5156	0.46	-1.4
8,875	+		GFF5156	0.46	-0.7
8,875	+		GFF5156	0.46	-1.9
8,875	+		GFF5156	0.46	-1.8
8,876	-		GFF5156	0.46	-1.8
8,876	-		GFF5156	0.46	-1.9
8,876	-		GFF5156	0.46	-2.9
8,876	-		GFF5156	0.46	-1.2
8,876	-		GFF5156	0.46	-0.7
8,876	-		GFF5156	0.46	-0.6
8,876	-		GFF5156	0.46	-1.4
8,876	-		GFF5156	0.46	-0.7
8,876	-		GFF5156	0.46	+0.9
8,876	-		GFF5156	0.46	-1.1
8,876	-		GFF5156	0.46	-1.7
8,876	-		GFF5156	0.46	-0.7
8,876	-		GFF5156	0.46	-0.3
8,876	-		GFF5156	0.46	-1.6
8,876	-		GFF5156	0.46	-2.2
8,876	-		GFF5156	0.46	-1.7
8,876	-		GFF5156	0.46	-1.2
8,876	-		GFF5156	0.46	-1.1
8,876	-		GFF5156	0.46	-0.9
8,876	-		GFF5156	0.46	-0.4
8,876	-		GFF5156	0.46	-0.3
8,876	-		GFF5156	0.46	-1.6
8,876	-		GFF5156	0.46	-1.6
8,968	+		GFF5156	0.53	-1.1
8,977	+		GFF5156	0.54	-0.4
8,977	+		GFF5156	0.54	-1.1
8,977	+		GFF5156	0.54	+0.0
8,977	+		GFF5156	0.54	-0.9
8,977	+		GFF5156	0.54	-1.5
8,977	+		GFF5156	0.54	-1.8
8,977	+		GFF5156	0.54	-0.5
8,977	+		GFF5156	0.54	-0.9
8,977	+		GFF5156	0.54	-1.2
8,977	+		GFF5156	0.54	-1.1
8,977	+		GFF5156	0.54	+0.3
8,978	-		GFF5156	0.54	-0.4
8,978	-		GFF5156	0.54	-0.4
8,978	-		GFF5156	0.54	-3.2
8,978	-		GFF5156	0.54	-1.0
8,978	-		GFF5156	0.54	-0.7
8,978	-		GFF5156	0.54	-1.6
8,978	-		GFF5156	0.54	+3.0
8,995	+		GFF5156	0.55	-0.6
8,995	+		GFF5156	0.55	+0.6
8,996	-		GFF5156	0.55	-2.5
8,996	-		GFF5156	0.55	-1.1
8,996	-		GFF5156	0.55	-0.4
8,996	-		GFF5156	0.55	-1.5
8,996	-		GFF5156	0.55	-0.4
8,996	-		GFF5156	0.55	-2.2
9,022	+		GFF5156	0.57	+0.0
9,022	+		GFF5156	0.57	-1.3
9,022	+		GFF5156	0.57	-2.4
9,022	+		GFF5156	0.57	-1.6
9,022	+		GFF5156	0.57	-1.6
9,023	-		GFF5156	0.57	-0.6
9,023	-		GFF5156	0.57	-1.4
9,023	-		GFF5156	0.57	-1.1
9,023	-		GFF5156	0.57	-1.1
9,023	-		GFF5156	0.57	-1.2
9,023	-		GFF5156	0.57	+0.6
9,023	-		GFF5156	0.57	-0.7
9,074	-		GFF5156	0.61	-1.5
9,074	-		GFF5156	0.61	-0.9