Strain Fitness in Variovorax sp. SCN45 around GFF514

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF513 and GFF514 are separated by 54 nucleotidesGFF514 and GFF515 are separated by 15 nucleotides GFF513 - Chitinase (EC 3.2.1.14), at 553,323 to 554,780 GFF513 GFF514 - no description, at 554,835 to 554,957 GFF514 GFF515 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 554,973 to 556,160 GFF515 Position (kb) 554 555Strain fitness (log2 ratio) -2 -1 0 1 2at 553.855 kb on + strand, within GFF513at 553.856 kb on - strand, within GFF513at 553.856 kb on - strand, within GFF513at 553.922 kb on - strand, within GFF513at 553.922 kb on - strand, within GFF513at 553.960 kb on + strand, within GFF513at 553.961 kb on - strand, within GFF513at 553.978 kb on + strand, within GFF513at 553.978 kb on + strand, within GFF513at 553.979 kb on - strand, within GFF513at 553.979 kb on - strand, within GFF513at 553.999 kb on + strand, within GFF513at 553.999 kb on + strand, within GFF513at 554.000 kb on - strand, within GFF513at 554.000 kb on - strand, within GFF513at 554.068 kb on + strand, within GFF513at 554.068 kb on + strand, within GFF513at 554.069 kb on - strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.176 kb on + strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.177 kb on - strand, within GFF513at 554.227 kb on + strand, within GFF513at 554.227 kb on + strand, within GFF513at 554.228 kb on - strand, within GFF513at 554.228 kb on - strand, within GFF513at 554.305 kb on + strand, within GFF513at 554.305 kb on + strand, within GFF513at 554.331 kb on - strand, within GFF513at 554.338 kb on + strand, within GFF513at 554.339 kb on - strand, within GFF513at 554.339 kb on - strand, within GFF513at 554.339 kb on - strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.341 kb on + strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.342 kb on - strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.404 kb on + strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.405 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 554.555 kb on - strand, within GFF513at 555.079 kb on + strandat 555.079 kb on + strandat 555.079 kb on + strandat 555.079 kb on + strandat 555.079 kb on + strandat 555.080 kb on - strandat 555.080 kb on - strandat 555.080 kb on - strandat 555.080 kb on - strandat 555.080 kb on - strandat 555.280 kb on + strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.281 kb on - strand, within GFF515at 555.331 kb on + strand, within GFF515at 555.331 kb on + strand, within GFF515at 555.332 kb on - strand, within GFF515at 555.332 kb on - strand, within GFF515at 555.332 kb on - strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.334 kb on + strand, within GFF515at 555.335 kb on - strand, within GFF515at 555.335 kb on - strand, within GFF515at 555.335 kb on - strand, within GFF515at 555.335 kb on - strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.337 kb on + strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.338 kb on - strand, within GFF515at 555.371 kb on - strand, within GFF515at 555.371 kb on - strand, within GFF515at 555.371 kb on - strand, within GFF515at 555.371 kb on - strand, within GFF515at 555.422 kb on - strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.568 kb on + strand, within GFF515at 555.569 kb on - strand, within GFF515at 555.569 kb on - strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.739 kb on + strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.740 kb on - strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.805 kb on + strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.806 kb on - strand, within GFF515at 555.887 kb on - strand, within GFF515

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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553,855 + GFF513 0.36 -0.1
553,856 - GFF513 0.37 -0.1
553,856 - GFF513 0.37 -1.1
553,922 - GFF513 0.41 -0.1
553,922 - GFF513 0.41 -0.2
553,960 + GFF513 0.44 +0.2
553,961 - GFF513 0.44 -0.2
553,978 + GFF513 0.45 -0.3
553,978 + GFF513 0.45 -1.1
553,979 - GFF513 0.45 +0.1
553,979 - GFF513 0.45 -0.4
553,999 + GFF513 0.46 +0.4
553,999 + GFF513 0.46 -0.4
554,000 - GFF513 0.46 +0.5
554,000 - GFF513 0.46 -0.5
554,068 + GFF513 0.51 +2.2
554,068 + GFF513 0.51 -2.3
554,069 - GFF513 0.51 +0.0
554,176 + GFF513 0.59 -0.2
554,176 + GFF513 0.59 -0.2
554,176 + GFF513 0.59 +0.3
554,177 - GFF513 0.59 -0.7
554,177 - GFF513 0.59 -0.2
554,177 - GFF513 0.59 +0.2
554,177 - GFF513 0.59 -0.2
554,227 + GFF513 0.62 -1.1
554,227 + GFF513 0.62 +0.7
554,228 - GFF513 0.62 +0.9
554,228 - GFF513 0.62 -0.3
554,305 + GFF513 0.67 -0.5
554,305 + GFF513 0.67 -0.5
554,331 - GFF513 0.69 -0.1
554,338 + GFF513 0.70 -1.1
554,339 - GFF513 0.70 +0.0
554,339 - GFF513 0.70 +0.2
554,339 - GFF513 0.70 -0.9
554,341 + GFF513 0.70 +0.6
554,341 + GFF513 0.70 +1.0
554,341 + GFF513 0.70 -0.4
554,341 + GFF513 0.70 -0.6
554,341 + GFF513 0.70 +1.9
554,342 - GFF513 0.70 -0.2
554,342 - GFF513 0.70 +0.0
554,342 - GFF513 0.70 -0.5
554,342 - GFF513 0.70 -0.3
554,342 - GFF513 0.70 -0.0
554,342 - GFF513 0.70 +0.1
554,342 - GFF513 0.70 -0.3
554,404 + GFF513 0.74 +0.0
554,404 + GFF513 0.74 -0.6
554,404 + GFF513 0.74 +0.6
554,404 + GFF513 0.74 +0.1
554,404 + GFF513 0.74 +0.2
554,404 + GFF513 0.74 -0.6
554,404 + GFF513 0.74 +0.9
554,404 + GFF513 0.74 -2.1
554,404 + GFF513 0.74 +0.4
554,405 - GFF513 0.74 -0.9
554,405 - GFF513 0.74 +1.9
554,405 - GFF513 0.74 +0.2
554,405 - GFF513 0.74 +0.2
554,405 - GFF513 0.74 -0.2
554,405 - GFF513 0.74 -0.4
554,405 - GFF513 0.74 -0.0
554,405 - GFF513 0.74 -0.9
554,405 - GFF513 0.74 +0.0
554,405 - GFF513 0.74 -0.1
554,405 - GFF513 0.74 +0.2
554,405 - GFF513 0.74 +0.6
554,405 - GFF513 0.74 -0.3
554,405 - GFF513 0.74 +1.0
554,405 - GFF513 0.74 +1.9
554,405 - GFF513 0.74 -1.1
554,405 - GFF513 0.74 +0.3
554,405 - GFF513 0.74 +1.0
554,405 - GFF513 0.74 -0.7
554,555 - GFF513 0.84 -0.3
554,555 - GFF513 0.84 +0.5
554,555 - GFF513 0.84 +1.2
554,555 - GFF513 0.84 -0.0
554,555 - GFF513 0.84 -0.3
555,079 + +0.4
555,079 + +0.3
555,079 + -0.0
555,079 + +0.2
555,079 + -0.5
555,080 - -1.0
555,080 - -0.2
555,080 - -1.3
555,080 - +0.5
555,080 - -0.1
555,280 + GFF515 0.26 -0.1
555,281 - GFF515 0.26 +1.0
555,281 - GFF515 0.26 -0.6
555,281 - GFF515 0.26 +0.2
555,281 - GFF515 0.26 -1.2
555,281 - GFF515 0.26 -0.2
555,331 + GFF515 0.30 +1.4
555,331 + GFF515 0.30 +0.2
555,332 - GFF515 0.30 -0.3
555,332 - GFF515 0.30 -0.3
555,332 - GFF515 0.30 -0.8
555,334 + GFF515 0.30 -0.1
555,334 + GFF515 0.30 -0.8
555,334 + GFF515 0.30 +0.0
555,334 + GFF515 0.30 -0.1
555,334 + GFF515 0.30 -0.6
555,335 - GFF515 0.30 -2.0
555,335 - GFF515 0.30 -1.2
555,335 - GFF515 0.30 -0.0
555,335 - GFF515 0.30 -1.0
555,337 + GFF515 0.31 +1.0
555,337 + GFF515 0.31 -0.9
555,337 + GFF515 0.31 -0.4
555,337 + GFF515 0.31 +0.2
555,337 + GFF515 0.31 +0.5
555,337 + GFF515 0.31 -0.1
555,338 - GFF515 0.31 -0.1
555,338 - GFF515 0.31 +0.1
555,338 - GFF515 0.31 +0.8
555,338 - GFF515 0.31 +0.3
555,338 - GFF515 0.31 +0.5
555,338 - GFF515 0.31 -0.0
555,371 - GFF515 0.34 +0.0
555,371 - GFF515 0.34 +0.2
555,371 - GFF515 0.34 -0.1
555,371 - GFF515 0.34 -0.3
555,422 - GFF515 0.38 +0.1
555,568 + GFF515 0.50 -0.1
555,568 + GFF515 0.50 -1.8
555,568 + GFF515 0.50 -0.2
555,568 + GFF515 0.50 +0.2
555,568 + GFF515 0.50 +1.2
555,569 - GFF515 0.50 -1.4
555,569 - GFF515 0.50 -1.7
555,739 + GFF515 0.64 -1.8
555,739 + GFF515 0.64 +0.6
555,739 + GFF515 0.64 -0.4
555,739 + GFF515 0.64 +0.2
555,739 + GFF515 0.64 -0.2
555,739 + GFF515 0.64 +0.7
555,739 + GFF515 0.64 -0.2
555,739 + GFF515 0.64 -0.9
555,739 + GFF515 0.64 -0.7
555,739 + GFF515 0.64 -0.7
555,739 + GFF515 0.64 +0.1
555,739 + GFF515 0.64 +0.6
555,739 + GFF515 0.64 +0.3
555,740 - GFF515 0.65 +0.1
555,740 - GFF515 0.65 -0.2
555,740 - GFF515 0.65 +0.6
555,740 - GFF515 0.65 +1.0
555,740 - GFF515 0.65 +0.4
555,740 - GFF515 0.65 -0.4
555,740 - GFF515 0.65 -0.4
555,740 - GFF515 0.65 -0.6
555,740 - GFF515 0.65 -0.2
555,740 - GFF515 0.65 -0.1
555,740 - GFF515 0.65 -0.0
555,740 - GFF515 0.65 -0.5
555,740 - GFF515 0.65 -0.5
555,740 - GFF515 0.65 +0.2
555,740 - GFF515 0.65 -0.1
555,740 - GFF515 0.65 -0.3
555,740 - GFF515 0.65 -1.4
555,805 + GFF515 0.70 +0.2
555,805 + GFF515 0.70 +0.4
555,805 + GFF515 0.70 -0.8
555,805 + GFF515 0.70 +0.6
555,805 + GFF515 0.70 -1.8
555,805 + GFF515 0.70 -0.1
555,805 + GFF515 0.70 -0.8
555,806 - GFF515 0.70 -1.4
555,806 - GFF515 0.70 +0.1
555,806 - GFF515 0.70 -0.2
555,806 - GFF515 0.70 -0.4
555,806 - GFF515 0.70 +0.1
555,806 - GFF515 0.70 -1.0
555,806 - GFF515 0.70 -0.0
555,806 - GFF515 0.70 -0.8
555,887 - GFF515 0.77 -0.5

Or see this region's nucleotide sequence