Strain Fitness in Variovorax sp. SCN45 around GFF5109

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5107 and GFF5108 overlap by 47 nucleotidesGFF5108 and GFF5109 overlap by 4 nucleotidesGFF5109 and GFF5110 are separated by 178 nucleotides GFF5107 - Transcriptional regulator, LysR family, at 208,618 to 209,568 GFF5107 GFF5108 - FIG00348319: hypothetical protein, at 209,522 to 210,280 GFF5108 GFF5109 - Alanine racemase (EC 5.1.1.1), at 210,277 to 211,380 GFF5109 GFF5110 - Putative transmembrane protein, at 211,559 to 212,863 GFF5110 Position (kb) 210 211 212Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.290 kb on + strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.291 kb on - strand, within GFF5107at 209.405 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.434 kb on + strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.435 kb on - strand, within GFF5107at 209.459 kb on - strand, within GFF5107at 209.459 kb on - strand, within GFF5107at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.709 kb on + strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.710 kb on - strand, within GFF5108at 209.760 kb on + strand, within GFF5108at 209.761 kb on - strand, within GFF5108at 209.920 kb on + strand, within GFF5108at 209.920 kb on + strand, within GFF5108at 209.920 kb on + strand, within GFF5108at 210.003 kb on + strand, within GFF5108at 210.063 kb on + strand, within GFF5108at 210.207 kb on + strandat 210.207 kb on + strandat 210.208 kb on - strandat 210.208 kb on - strandat 210.208 kb on - strandat 210.208 kb on - strandat 210.208 kb on - strandat 211.420 kb on + strandat 211.420 kb on + strandat 211.420 kb on + strandat 211.420 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.484 kb on + strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.485 kb on - strandat 211.523 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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209,290 + GFF5107 0.71 +0.8
209,290 + GFF5107 0.71 +0.3
209,290 + GFF5107 0.71 -0.3
209,290 + GFF5107 0.71 -0.3
209,290 + GFF5107 0.71 -0.4
209,290 + GFF5107 0.71 +2.0
209,290 + GFF5107 0.71 +0.8
209,290 + GFF5107 0.71 -0.2
209,290 + GFF5107 0.71 -0.2
209,290 + GFF5107 0.71 -0.7
209,290 + GFF5107 0.71 +0.8
209,290 + GFF5107 0.71 +0.0
209,290 + GFF5107 0.71 -0.6
209,291 - GFF5107 0.71 -0.2
209,291 - GFF5107 0.71 -1.7
209,291 - GFF5107 0.71 +0.1
209,291 - GFF5107 0.71 +1.8
209,291 - GFF5107 0.71 -0.6
209,291 - GFF5107 0.71 +0.4
209,405 + GFF5107 0.83 -1.1
209,434 + GFF5107 0.86 -0.3
209,434 + GFF5107 0.86 -0.4
209,434 + GFF5107 0.86 -1.2
209,435 - GFF5107 0.86 +0.1
209,435 - GFF5107 0.86 +0.1
209,435 - GFF5107 0.86 -0.2
209,435 - GFF5107 0.86 -1.0
209,459 - GFF5107 0.88 -2.0
209,459 - GFF5107 0.88 +0.8
209,709 + GFF5108 0.25 -0.3
209,709 + GFF5108 0.25 -0.3
209,709 + GFF5108 0.25 -0.5
209,709 + GFF5108 0.25 -0.1
209,709 + GFF5108 0.25 +1.2
209,709 + GFF5108 0.25 -0.2
209,709 + GFF5108 0.25 +2.3
209,709 + GFF5108 0.25 -0.7
209,710 - GFF5108 0.25 -0.1
209,710 - GFF5108 0.25 -0.2
209,710 - GFF5108 0.25 +0.4
209,710 - GFF5108 0.25 -0.2
209,710 - GFF5108 0.25 +0.1
209,710 - GFF5108 0.25 +1.8
209,710 - GFF5108 0.25 +0.8
209,760 + GFF5108 0.31 -0.3
209,761 - GFF5108 0.31 -1.0
209,920 + GFF5108 0.52 -0.9
209,920 + GFF5108 0.52 -0.2
209,920 + GFF5108 0.52 -0.6
210,003 + GFF5108 0.63 -0.0
210,063 + GFF5108 0.71 +0.0
210,207 + -0.2
210,207 + +0.4
210,208 - -1.9
210,208 - -0.3
210,208 - -0.4
210,208 - +0.9
210,208 - +0.0
211,420 + -0.7
211,420 + +0.2
211,420 + +0.1
211,420 + -0.2
211,484 + -1.2
211,484 + +0.2
211,484 + -0.5
211,484 + +0.2
211,484 + +0.8
211,484 + -1.3
211,484 + +0.8
211,484 + +0.8
211,484 + -0.7
211,484 + +3.8
211,484 + -0.2
211,484 + +0.2
211,485 - -0.3
211,485 - -0.0
211,485 - +0.0
211,485 - -0.6
211,485 - -0.1
211,485 - -1.4
211,485 - +0.5
211,485 - -0.3
211,485 - +0.3
211,485 - -0.2
211,485 - -0.6
211,485 - -0.1
211,485 - -0.9
211,485 - -0.3
211,523 + -0.6

Or see this region's nucleotide sequence