Strain Fitness in Variovorax sp. SCN45 around GFF4762

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4761 and GFF4762 are separated by 25 nucleotidesGFF4762 and GFF4763 are separated by 24 nucleotides GFF4761 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 126,835 to 128,868 GFF4761 GFF4762 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 128,894 to 130,372 GFF4762 GFF4763 - NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3), at 130,397 to 131,884 GFF4763 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -1 0 1at 130.385 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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130,385 + -0.2

Or see this region's nucleotide sequence