Strain Fitness in Variovorax sp. SCN45 around GFF4760

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4758 and GFF4759 are separated by 37 nucleotidesGFF4759 and GFF4760 overlap by 4 nucleotidesGFF4760 and GFF4761 are separated by 7 nucleotides GFF4758 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 125,307 to 125,828 GFF4758 GFF4759 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 125,866 to 126,522 GFF4759 GFF4760 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3), at 126,519 to 126,827 GFF4760 GFF4761 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 126,835 to 128,868 GFF4761 Position (kb) 126 127Strain fitness (log2 ratio) -1 0 1at 125.778 kb on + strandat 126.503 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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125,778 + -0.8
126,503 + -0.5

Or see this region's nucleotide sequence