Strain Fitness in Variovorax sp. SCN45 around GFF4756

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4755 and GFF4756 are separated by 20 nucleotidesGFF4756 and GFF4757 overlap by 4 nucleotides GFF4755 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 120,681 to 122,021 GFF4755 GFF4756 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 122,042 to 124,213 GFF4756 GFF4757 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 124,210 to 125,289 GFF4757 Position (kb) 122 123 124 125Strain fitness (log2 ratio) -1 0 1at 122.037 kb on + strandat 122.037 kb on + strandat 122.037 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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122,037 + +0.3
122,037 + -1.2
122,037 + -0.7

Or see this region's nucleotide sequence