Strain Fitness in Variovorax sp. SCN45 around GFF4753

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4751 and GFF4752 are separated by 13 nucleotidesGFF4752 and GFF4753 are separated by 5 nucleotidesGFF4753 and GFF4754 are separated by 10 nucleotidesGFF4754 and GFF4755 overlap by 1 nucleotides GFF4751 - NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3), at 117,753 to 118,232 GFF4751 GFF4752 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3), at 118,246 to 118,857 GFF4752 GFF4753 - NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 118,863 to 120,116 GFF4753 GFF4754 - NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3), at 120,127 to 120,681 GFF4754 GFF4755 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 120,681 to 122,021 GFF4755 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -1 0 1at 118.837 kb on + strandat 118.862 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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118,837 + +1.6
118,862 + -0.5

Or see this region's nucleotide sequence