Strain Fitness in Variovorax sp. SCN45 around GFF4739

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
105,744	+				-1.4
105,744	+				-0.5
105,744	+				+0.3
105,745	-				-0.1
105,942	+				+0.6
105,943	-				+0.5
105,943	-				-0.4
105,943	-				-0.8
107,011	+				-0.5
107,012	-				-0.0
107,199	+		GFF4740	0.15	-0.4
107,199	+		GFF4740	0.15	-0.6
107,199	+		GFF4740	0.15	+0.2
107,200	-		GFF4740	0.15	-0.7
107,238	+		GFF4740	0.21	-0.1
107,238	+		GFF4740	0.21	+0.6
107,238	+		GFF4740	0.21	-0.6
107,238	+		GFF4740	0.21	-0.7
107,238	+		GFF4740	0.21	-0.0
107,239	-		GFF4740	0.21	+0.3
107,239	-		GFF4740	0.21	+0.5
107,239	-		GFF4740	0.21	+0.2
107,239	-		GFF4740	0.21	-0.5
107,365	-		GFF4740	0.41	-1.1
107,365	-		GFF4740	0.41	+0.2
107,443	-		GFF4740	0.53	+0.7
107,469	+		GFF4740	0.57	-1.2
107,469	+		GFF4740	0.57	+1.0
107,469	+		GFF4740	0.57	+0.0
107,469	+		GFF4740	0.57	+0.6
107,470	-		GFF4740	0.57	+0.4
107,470	-		GFF4740	0.57	-0.7
107,470	-		GFF4740	0.57	+1.4
107,470	-		GFF4740	0.57	-1.1
107,532	+		GFF4740	0.67	-0.5
107,532	+		GFF4740	0.67	+0.6
107,532	+		GFF4740	0.67	-0.3
107,532	+		GFF4740	0.67	+0.6
107,532	+		GFF4740	0.67	+0.6
107,532	+		GFF4740	0.67	-0.9
107,532	+		GFF4740	0.67	+0.3
107,532	+		GFF4740	0.67	-0.4
107,532	+		GFF4740	0.67	-0.6
107,533	-		GFF4740	0.67	-0.0
107,533	-		GFF4740	0.67	-0.1
107,533	-		GFF4740	0.67	-0.1
107,533	-		GFF4740	0.67	+1.0
107,533	-		GFF4740	0.67	-0.5
107,533	-		GFF4740	0.67	-1.2
107,533	-		GFF4740	0.67	+0.1
107,533	-		GFF4740	0.67	+0.4
107,535	+		GFF4740	0.67	+0.0
107,535	+		GFF4740	0.67	+0.1
107,535	+		GFF4740	0.67	+0.6
107,535	+		GFF4740	0.67	-0.2
107,535	+		GFF4740	0.67	-0.5
107,535	+		GFF4740	0.67	-0.4
107,535	+		GFF4740	0.67	+0.8
107,536	-		GFF4740	0.67	+0.8
107,536	-		GFF4740	0.67	+0.4
107,536	-		GFF4740	0.67	-2.0
107,536	-		GFF4740	0.67	-0.5
107,536	-		GFF4740	0.67	+0.8
107,536	-		GFF4740	0.67	+0.5
107,538	+		GFF4740	0.68	-0.7
107,538	+		GFF4740	0.68	-0.7
107,539	-		GFF4740	0.68	-0.6
107,539	-		GFF4740	0.68	-0.6
107,539	-		GFF4740	0.68	-0.7
107,539	-		GFF4740	0.68	+0.4
107,539	-		GFF4740	0.68	+2.3
107,539	-		GFF4740	0.68	-0.3
107,539	-		GFF4740	0.68	-0.4
107,539	-		GFF4740	0.68	+0.1
107,539	-		GFF4740	0.68	-0.0
107,539	-		GFF4740	0.68	-0.7
107,539	-		GFF4740	0.68	-1.5
107,539	-		GFF4740	0.68	+0.8
107,539	-		GFF4740	0.68	+1.3
107,637	+		GFF4740	0.83	-0.7
107,637	+		GFF4740	0.83	+0.7
107,638	-		GFF4740	0.83	-1.9
107,638	-		GFF4740	0.83	+0.8
107,638	-		GFF4740	0.83	-0.1
107,638	-		GFF4740	0.83	+0.8
107,761	-				+1.3
107,761	-				-0.5
107,815	-				-0.2
107,891	+				-0.3
107,891	+				+0.5
107,891	+				-0.4
107,891	+				-0.2
107,892	-				-0.0
107,892	-				-0.5
107,892	-				-0.5
107,901	+				+0.1
107,901	+				+0.6
107,901	+				+0.0
107,901	+				-1.2
107,901	+				-0.3
107,902	-				-0.9
107,902	-				+0.5
107,902	-				-0.8
107,902	-				-1.4
107,902	-				-0.2
107,902	-				-0.5