Strain Fitness in Variovorax sp. SCN45 around GFF4732

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4731 and GFF4732 are separated by 48 nucleotidesGFF4732 and GFF4733 are separated by 9 nucleotidesGFF4733 and GFF4734 overlap by 4 nucleotides GFF4731 - Assimilatory nitrate reductase large subunit (EC 1.7.99.4), at 94,717 to 97,509 GFF4731 GFF4732 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 97,558 to 97,953 GFF4732 GFF4733 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 97,963 to 98,754 GFF4733 GFF4734 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 98,751 to 101,219 GFF4734 Position (kb) 97 98Strain fitness (log2 ratio) -2 -1 0 1 2at 96.620 kb on + strand, within GFF4731at 96.621 kb on - strand, within GFF4731at 96.621 kb on - strand, within GFF4731at 96.621 kb on - strand, within GFF4731at 96.718 kb on - strand, within GFF4731at 96.718 kb on - strand, within GFF4731at 96.718 kb on - strand, within GFF4731at 96.773 kb on + strand, within GFF4731at 96.774 kb on - strand, within GFF4731at 96.774 kb on - strand, within GFF4731at 96.774 kb on - strand, within GFF4731at 96.774 kb on - strand, within GFF4731at 97.029 kb on - strand, within GFF4731at 97.067 kb on + strand, within GFF4731at 97.068 kb on - strand, within GFF4731at 97.157 kb on + strand, within GFF4731at 97.157 kb on + strand, within GFF4731at 97.157 kb on + strand, within GFF4731at 97.158 kb on - strand, within GFF4731at 97.158 kb on - strand, within GFF4731at 97.158 kb on - strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.160 kb on + strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.161 kb on - strand, within GFF4731at 97.190 kb on + strand, within GFF4731at 97.191 kb on - strand, within GFF4731at 97.481 kb on + strandat 97.560 kb on - strandat 97.964 kb on + strandat 97.964 kb on + strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.965 kb on - strandat 97.982 kb on + strandat 97.983 kb on - strandat 98.258 kb on + strand, within GFF4733at 98.259 kb on - strand, within GFF4733at 98.345 kb on + strand, within GFF4733at 98.480 kb on + strand, within GFF4733at 98.481 kb on - strand, within GFF4733at 98.609 kb on + strand, within GFF4733at 98.609 kb on + strand, within GFF4733at 98.610 kb on - strand, within GFF4733at 98.610 kb on - strand, within GFF4733at 98.921 kb on - strandat 98.944 kb on + strandat 98.944 kb on + strandat 98.944 kb on + strandat 98.945 kb on - strandat 98.945 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
96,620 + GFF4731 0.68 -0.5
96,621 - GFF4731 0.68 -0.2
96,621 - GFF4731 0.68 -0.0
96,621 - GFF4731 0.68 -0.7
96,718 - GFF4731 0.72 -0.8
96,718 - GFF4731 0.72 +0.2
96,718 - GFF4731 0.72 -0.3
96,773 + GFF4731 0.74 +0.6
96,774 - GFF4731 0.74 +0.9
96,774 - GFF4731 0.74 -0.0
96,774 - GFF4731 0.74 -1.4
96,774 - GFF4731 0.74 -1.4
97,029 - GFF4731 0.83 -0.7
97,067 + GFF4731 0.84 +1.3
97,068 - GFF4731 0.84 -0.3
97,157 + GFF4731 0.87 -0.1
97,157 + GFF4731 0.87 -2.2
97,157 + GFF4731 0.87 -0.1
97,158 - GFF4731 0.87 +0.2
97,158 - GFF4731 0.87 -1.2
97,158 - GFF4731 0.87 -0.3
97,160 + GFF4731 0.87 -0.4
97,160 + GFF4731 0.87 +0.1
97,160 + GFF4731 0.87 -0.0
97,160 + GFF4731 0.87 -0.6
97,160 + GFF4731 0.87 -1.3
97,160 + GFF4731 0.87 +0.4
97,161 - GFF4731 0.88 -0.4
97,161 - GFF4731 0.88 -0.5
97,161 - GFF4731 0.88 -0.7
97,161 - GFF4731 0.88 +0.8
97,161 - GFF4731 0.88 +0.3
97,161 - GFF4731 0.88 -0.2
97,190 + GFF4731 0.89 -0.1
97,191 - GFF4731 0.89 +1.1
97,481 + -0.8
97,560 - -0.5
97,964 + -0.3
97,964 + +0.2
97,965 - -0.7
97,965 - -0.6
97,965 - +0.7
97,965 - +1.7
97,982 + -0.1
97,983 - +0.7
98,258 + GFF4733 0.37 +0.1
98,259 - GFF4733 0.37 -0.4
98,345 + GFF4733 0.48 -0.8
98,480 + GFF4733 0.65 -0.3
98,481 - GFF4733 0.65 +0.6
98,609 + GFF4733 0.82 +1.3
98,609 + GFF4733 0.82 -0.1
98,610 - GFF4733 0.82 -1.5
98,610 - GFF4733 0.82 +0.7
98,921 - -1.2
98,944 + -0.9
98,944 + +1.4
98,944 + -1.0
98,945 - -0.3
98,945 - +2.1

Or see this region's nucleotide sequence