Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4668 and GFF4669 are separated by 125 nucleotides GFF4669 and GFF4670 are separated by 89 nucleotides GFF4670 and GFF4671 overlap by 4 nucleotides
GFF4668 - hypothetical protein, at 25,193 to 26,209
GFF4668
GFF4669 - Pca operon transcriptional activator PcaQ, at 26,335 to 27,264
GFF4669
GFF4670 - Transcriptional regulator, AcrR family, at 27,354 to 27,959
GFF4670
GFF4671 - putative membrane protein, at 27,956 to 29,167
GFF4671
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.410 kb on + strand, within GFF4668 at 25.410 kb on + strand, within GFF4668 at 25.410 kb on + strand, within GFF4668 at 25.411 kb on - strand, within GFF4668 at 25.614 kb on + strand, within GFF4668 at 25.614 kb on + strand, within GFF4668 at 25.615 kb on - strand, within GFF4668 at 25.615 kb on - strand, within GFF4668 at 26.242 kb on + strand at 26.243 kb on - strand at 26.243 kb on - strand at 26.296 kb on + strand at 26.297 kb on - strand at 26.300 kb on + strand at 26.301 kb on - strand at 26.302 kb on + strand at 26.302 kb on + strand at 26.302 kb on + strand at 26.303 kb on - strand at 27.292 kb on + strand at 27.319 kb on + strand at 27.319 kb on + strand at 27.505 kb on - strand, within GFF4670 at 27.571 kb on - strand, within GFF4670 at 27.571 kb on - strand, within GFF4670 at 27.661 kb on + strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.661 kb on - strand, within GFF4670 at 27.781 kb on + strand, within GFF4670 at 27.782 kb on - strand, within GFF4670 at 28.067 kb on + strand at 28.068 kb on - strand at 28.157 kb on + strand, within GFF4671 at 28.157 kb on + strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.158 kb on - strand, within GFF4671 at 28.185 kb on - strand, within GFF4671 at 28.185 kb on - strand, within GFF4671
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 25,410 + GFF4668 0.21 -0.2 25,410 + GFF4668 0.21 -0.1 25,410 + GFF4668 0.21 -1.4 25,411 - GFF4668 0.21 +0.1 25,614 + GFF4668 0.41 +0.3 25,614 + GFF4668 0.41 -0.5 25,615 - GFF4668 0.41 -0.0 25,615 - GFF4668 0.41 +0.1 26,242 + -0.1 26,243 - -0.3 26,243 - -0.8 26,296 + -0.3 26,297 - -0.9 26,300 + -0.5 26,301 - +2.1 26,302 + +0.1 26,302 + -0.3 26,302 + -0.1 26,303 - -0.1 27,292 + -0.7 27,319 + -0.8 27,319 + +0.1 27,505 - GFF4670 0.25 -0.6 27,571 - GFF4670 0.36 -0.0 27,571 - GFF4670 0.36 -0.6 27,661 + GFF4670 0.51 -0.1 27,661 - GFF4670 0.51 +0.1 27,661 - GFF4670 0.51 -0.3 27,661 - GFF4670 0.51 +0.2 27,781 + GFF4670 0.70 -0.4 27,782 - GFF4670 0.71 -1.4 28,067 + -0.5 28,068 - +0.8 28,157 + GFF4671 0.17 -0.3 28,157 + GFF4671 0.17 -0.5 28,158 - GFF4671 0.17 -2.5 28,158 - GFF4671 0.17 -0.8 28,158 - GFF4671 0.17 -0.7 28,185 - GFF4671 0.19 -0.4 28,185 - GFF4671 0.19 -0.4
Or see this region's nucleotide sequence