Strain Fitness in Variovorax sp. SCN45 around GFF4652

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
7,553	+		GFF4651	0.27	+0.2
7,553	+		GFF4651	0.27	+0.2
7,553	+		GFF4651	0.27	-0.4
7,554	-		GFF4651	0.27	-1.2
7,869	-		GFF4651	0.55	+1.6
7,869	-		GFF4651	0.55	-0.8
7,880	+		GFF4651	0.56	-0.3
7,881	-		GFF4651	0.56	-0.7
7,881	-		GFF4651	0.56	-0.1
8,169	-		GFF4651	0.81	+0.9
8,410	+				-0.8
9,128	+		GFF4653	0.16	+0.1
9,129	-		GFF4653	0.16	+0.2
9,161	+		GFF4653	0.18	+0.3
9,161	+		GFF4653	0.18	-1.1
9,162	-		GFF4653	0.18	+0.3
9,162	-		GFF4653	0.18	+0.9
9,162	-		GFF4653	0.18	-0.7
9,264	-		GFF4653	0.26	+0.9
9,294	-		GFF4653	0.29	+0.3
9,530	+		GFF4653	0.47	-0.0
9,530	+		GFF4653	0.47	+0.3
9,531	-		GFF4653	0.47	-0.8
9,548	+		GFF4653	0.48	+0.4
9,548	+		GFF4653	0.48	-0.2
9,548	+		GFF4653	0.48	-0.2
9,548	+		GFF4653	0.48	+1.3
9,548	+		GFF4653	0.48	+0.9
9,549	-		GFF4653	0.48	-0.0
9,549	-		GFF4653	0.48	+1.3
9,663	-		GFF4653	0.57	-0.8
9,867	-		GFF4653	0.73	+0.2
9,867	-		GFF4653	0.73	-0.6
9,867	-		GFF4653	0.73	-0.4