Strain Fitness in Variovorax sp. SCN45 around GFF4635

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4633 and GFF4634 are separated by 1 nucleotidesGFF4634 and GFF4635 overlap by 4 nucleotidesGFF4635 and GFF4636 are separated by 25 nucleotides GFF4633 - no description, at 274,453 to 274,818 GFF4633 GFF4634 - Transketolase, C-terminal section (EC 2.2.1.1), at 274,820 to 275,737 GFF4634 GFF4635 - Transketolase, N-terminal section (EC 2.2.1.1), at 275,734 to 276,546 GFF4635 GFF4636 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 276,572 to 277,567 GFF4636 Position (kb) 275 276 277Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 274.735 kb on + strand, within GFF4633at 274.757 kb on + strand, within GFF4633at 274.908 kb on + strandat 274.908 kb on + strandat 274.909 kb on - strandat 274.909 kb on - strandat 275.280 kb on + strand, within GFF4634at 275.280 kb on + strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.281 kb on - strand, within GFF4634at 275.359 kb on + strand, within GFF4634at 275.360 kb on - strand, within GFF4634at 275.360 kb on - strand, within GFF4634at 275.361 kb on + strand, within GFF4634at 275.361 kb on + strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.362 kb on - strand, within GFF4634at 275.386 kb on + strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.425 kb on - strand, within GFF4634at 275.473 kb on - strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.613 kb on + strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.614 kb on - strand, within GFF4634at 275.656 kb on - strandat 275.775 kb on - strandat 275.798 kb on + strandat 275.798 kb on + strandat 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.825 kb on + strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 275.826 kb on - strand, within GFF4635at 276.012 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.137 kb on + strand, within GFF4635at 276.138 kb on - strand, within GFF4635at 276.138 kb on - strand, within GFF4635at 276.184 kb on + strand, within GFF4635at 276.184 kb on + strand, within GFF4635at 276.185 kb on - strand, within GFF4635at 276.185 kb on - strand, within GFF4635at 276.214 kb on - strand, within GFF4635at 276.214 kb on - strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.284 kb on + strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.285 kb on - strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.335 kb on + strand, within GFF4635at 276.336 kb on - strand, within GFF4635at 276.336 kb on - strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.374 kb on + strand, within GFF4635at 276.410 kb on + strand, within GFF4635at 276.491 kb on + strandat 276.492 kb on - strandat 276.492 kb on - strandat 276.690 kb on + strand, within GFF4636at 276.690 kb on + strand, within GFF4636at 276.691 kb on - strand, within GFF4636at 276.691 kb on - strand, within GFF4636at 276.816 kb on + strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.817 kb on - strand, within GFF4636at 276.879 kb on + strand, within GFF4636at 276.879 kb on + strand, within GFF4636at 276.880 kb on - strand, within GFF4636at 276.886 kb on - strand, within GFF4636at 276.886 kb on - strand, within GFF4636at 276.960 kb on - strand, within GFF4636at 276.960 kb on - strand, within GFF4636at 276.960 kb on - strand, within GFF4636at 276.987 kb on + strand, within GFF4636at 276.987 kb on + strand, within GFF4636at 276.988 kb on - strand, within GFF4636at 276.988 kb on - strand, within GFF4636at 276.988 kb on - strand, within GFF4636at 277.080 kb on + strand, within GFF4636at 277.080 kb on + strand, within GFF4636at 277.081 kb on - strand, within GFF4636at 277.081 kb on - strand, within GFF4636at 277.152 kb on + strand, within GFF4636at 277.153 kb on - strand, within GFF4636at 277.232 kb on + strand, within GFF4636at 277.232 kb on + strand, within GFF4636at 277.232 kb on + strand, within GFF4636at 277.232 kb on + strand, within GFF4636at 277.233 kb on - strand, within GFF4636at 277.233 kb on - strand, within GFF4636at 277.233 kb on - strand, within GFF4636

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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274,735 + GFF4633 0.77 -0.0
274,757 + GFF4633 0.83 +1.2
274,908 + -0.2
274,908 + -0.4
274,909 - +0.4
274,909 - +0.1
275,280 + GFF4634 0.50 +1.6
275,280 + GFF4634 0.50 -0.7
275,281 - GFF4634 0.50 +0.5
275,281 - GFF4634 0.50 -0.6
275,281 - GFF4634 0.50 +0.0
275,359 + GFF4634 0.59 -0.4
275,360 - GFF4634 0.59 -0.7
275,360 - GFF4634 0.59 -1.2
275,361 + GFF4634 0.59 -0.1
275,361 + GFF4634 0.59 -0.7
275,362 - GFF4634 0.59 +0.2
275,362 - GFF4634 0.59 -1.0
275,362 - GFF4634 0.59 -0.4
275,386 + GFF4634 0.62 -0.3
275,425 - GFF4634 0.66 -0.1
275,425 - GFF4634 0.66 -0.5
275,425 - GFF4634 0.66 -0.7
275,473 - GFF4634 0.71 -0.1
275,613 + GFF4634 0.86 -0.4
275,613 + GFF4634 0.86 -1.3
275,613 + GFF4634 0.86 -1.2
275,613 + GFF4634 0.86 +0.5
275,613 + GFF4634 0.86 -0.2
275,613 + GFF4634 0.86 -0.1
275,614 - GFF4634 0.86 +0.1
275,614 - GFF4634 0.86 -0.5
275,614 - GFF4634 0.86 -0.8
275,614 - GFF4634 0.86 -0.0
275,614 - GFF4634 0.86 -0.6
275,656 - -1.2
275,775 - -0.1
275,798 + -0.2
275,798 + +0.1
275,825 + GFF4635 0.11 +2.2
275,825 + GFF4635 0.11 -1.1
275,825 + GFF4635 0.11 +0.7
275,825 + GFF4635 0.11 +0.8
275,825 + GFF4635 0.11 -0.7
275,825 + GFF4635 0.11 -0.3
275,826 - GFF4635 0.11 +1.6
275,826 - GFF4635 0.11 +0.6
275,826 - GFF4635 0.11 +0.0
275,826 - GFF4635 0.11 +1.0
275,826 - GFF4635 0.11 -0.7
275,826 - GFF4635 0.11 -0.3
275,826 - GFF4635 0.11 +0.9
275,826 - GFF4635 0.11 -2.4
276,012 + GFF4635 0.34 +0.6
276,137 + GFF4635 0.50 +0.0
276,137 + GFF4635 0.50 -0.4
276,137 + GFF4635 0.50 -0.7
276,138 - GFF4635 0.50 -0.5
276,138 - GFF4635 0.50 +1.3
276,184 + GFF4635 0.55 -0.8
276,184 + GFF4635 0.55 -1.0
276,185 - GFF4635 0.55 -1.1
276,185 - GFF4635 0.55 +0.5
276,214 - GFF4635 0.59 -0.1
276,214 - GFF4635 0.59 -1.2
276,284 + GFF4635 0.68 -0.1
276,284 + GFF4635 0.68 +1.3
276,284 + GFF4635 0.68 -0.8
276,284 + GFF4635 0.68 -0.2
276,284 + GFF4635 0.68 +0.9
276,284 + GFF4635 0.68 +0.1
276,284 + GFF4635 0.68 -0.4
276,284 + GFF4635 0.68 +0.1
276,284 + GFF4635 0.68 -1.4
276,284 + GFF4635 0.68 -0.2
276,285 - GFF4635 0.68 +0.1
276,285 - GFF4635 0.68 -0.1
276,285 - GFF4635 0.68 +0.6
276,285 - GFF4635 0.68 -0.2
276,285 - GFF4635 0.68 -0.4
276,335 + GFF4635 0.74 +0.4
276,335 + GFF4635 0.74 +0.1
276,335 + GFF4635 0.74 -0.7
276,336 - GFF4635 0.74 +0.2
276,336 - GFF4635 0.74 +0.6
276,374 + GFF4635 0.79 -0.0
276,374 + GFF4635 0.79 -0.2
276,374 + GFF4635 0.79 -0.3
276,410 + GFF4635 0.83 +0.1
276,491 + +0.3
276,492 - -0.6
276,492 - +0.9
276,690 + GFF4636 0.12 -0.1
276,690 + GFF4636 0.12 -0.6
276,691 - GFF4636 0.12 +0.3
276,691 - GFF4636 0.12 +2.0
276,816 + GFF4636 0.24 -1.0
276,817 - GFF4636 0.25 +0.1
276,817 - GFF4636 0.25 +1.6
276,817 - GFF4636 0.25 -0.8
276,817 - GFF4636 0.25 -1.1
276,817 - GFF4636 0.25 +2.1
276,817 - GFF4636 0.25 +0.4
276,817 - GFF4636 0.25 -2.8
276,879 + GFF4636 0.31 -0.1
276,879 + GFF4636 0.31 -0.6
276,880 - GFF4636 0.31 +0.6
276,886 - GFF4636 0.32 +0.0
276,886 - GFF4636 0.32 +0.1
276,960 - GFF4636 0.39 -0.3
276,960 - GFF4636 0.39 +0.4
276,960 - GFF4636 0.39 -0.0
276,987 + GFF4636 0.42 +0.5
276,987 + GFF4636 0.42 +0.0
276,988 - GFF4636 0.42 +1.6
276,988 - GFF4636 0.42 +0.1
276,988 - GFF4636 0.42 -0.4
277,080 + GFF4636 0.51 +0.1
277,080 + GFF4636 0.51 -0.3
277,081 - GFF4636 0.51 +2.5
277,081 - GFF4636 0.51 -0.4
277,152 + GFF4636 0.58 -0.2
277,153 - GFF4636 0.58 +0.3
277,232 + GFF4636 0.66 -0.1
277,232 + GFF4636 0.66 +0.5
277,232 + GFF4636 0.66 +0.3
277,232 + GFF4636 0.66 -0.6
277,233 - GFF4636 0.66 -0.6
277,233 - GFF4636 0.66 -0.5
277,233 - GFF4636 0.66 -1.2

Or see this region's nucleotide sequence