Strain Fitness in Variovorax sp. SCN45 around GFF4599

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4598 and GFF4599 are separated by 41 nucleotidesGFF4599 and GFF4600 are separated by 10 nucleotides GFF4598 - Efflux ABC transporter, permease/ATP-binding protein mlr7818, at 239,756 to 241,588 GFF4598 GFF4599 - Acyl-CoA hydrolase (EC 3.1.2.20), at 241,630 to 242,055 GFF4599 GFF4600 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 242,066 to 243,241 GFF4600 Position (kb) 241 242 243Strain fitness (log2 ratio) -2 -1 0 1at 240.636 kb on + strand, within GFF4598at 240.636 kb on + strand, within GFF4598at 240.637 kb on - strand, within GFF4598at 240.637 kb on - strand, within GFF4598at 240.637 kb on - strand, within GFF4598at 240.831 kb on + strand, within GFF4598at 240.832 kb on - strand, within GFF4598at 240.864 kb on + strand, within GFF4598at 240.864 kb on + strand, within GFF4598at 240.865 kb on - strand, within GFF4598at 240.865 kb on - strand, within GFF4598at 240.865 kb on - strand, within GFF4598at 240.879 kb on + strand, within GFF4598at 240.880 kb on - strand, within GFF4598at 240.880 kb on - strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.987 kb on + strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 240.988 kb on - strand, within GFF4598at 241.092 kb on + strand, within GFF4598at 241.093 kb on - strand, within GFF4598at 241.311 kb on + strand, within GFF4598at 241.312 kb on - strand, within GFF4598at 241.470 kb on + strandat 241.470 kb on + strandat 241.470 kb on + strandat 241.470 kb on + strandat 241.470 kb on + strandat 241.482 kb on + strandat 241.638 kb on + strandat 241.805 kb on - strand, within GFF4599at 241.888 kb on + strand, within GFF4599at 241.889 kb on - strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.972 kb on + strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 241.973 kb on - strand, within GFF4599at 242.002 kb on + strand, within GFF4599at 242.002 kb on + strand, within GFF4599at 242.002 kb on + strand, within GFF4599at 242.002 kb on + strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.003 kb on - strand, within GFF4599at 242.012 kb on + strand, within GFF4599at 242.012 kb on + strand, within GFF4599at 242.013 kb on - strandat 242.013 kb on - strandat 242.151 kb on + strandat 242.152 kb on - strandat 242.152 kb on - strandat 242.152 kb on - strandat 242.152 kb on - strandat 242.332 kb on - strand, within GFF4600at 242.415 kb on + strand, within GFF4600at 242.415 kb on + strand, within GFF4600at 242.415 kb on + strand, within GFF4600at 242.416 kb on - strand, within GFF4600at 242.416 kb on - strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.466 kb on + strand, within GFF4600at 242.467 kb on - strand, within GFF4600at 242.467 kb on - strand, within GFF4600at 242.467 kb on - strand, within GFF4600at 242.622 kb on + strand, within GFF4600at 242.622 kb on + strand, within GFF4600at 242.623 kb on - strand, within GFF4600at 242.623 kb on - strand, within GFF4600at 242.623 kb on - strand, within GFF4600at 242.623 kb on - strand, within GFF4600at 242.733 kb on + strand, within GFF4600at 242.734 kb on - strand, within GFF4600at 242.734 kb on - strand, within GFF4600at 242.922 kb on + strand, within GFF4600at 242.923 kb on - strand, within GFF4600

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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240,636 + GFF4598 0.48 -0.4
240,636 + GFF4598 0.48 +0.4
240,637 - GFF4598 0.48 -0.4
240,637 - GFF4598 0.48 -1.0
240,637 - GFF4598 0.48 +1.1
240,831 + GFF4598 0.59 +0.3
240,832 - GFF4598 0.59 +0.3
240,864 + GFF4598 0.60 +0.6
240,864 + GFF4598 0.60 -0.4
240,865 - GFF4598 0.61 -1.2
240,865 - GFF4598 0.61 +0.4
240,865 - GFF4598 0.61 +0.0
240,879 + GFF4598 0.61 -0.5
240,880 - GFF4598 0.61 -0.5
240,880 - GFF4598 0.61 +0.0
240,987 + GFF4598 0.67 +0.0
240,987 + GFF4598 0.67 +1.5
240,987 + GFF4598 0.67 -1.0
240,987 + GFF4598 0.67 +0.1
240,987 + GFF4598 0.67 -0.7
240,988 - GFF4598 0.67 -0.4
240,988 - GFF4598 0.67 -0.5
240,988 - GFF4598 0.67 -0.5
240,988 - GFF4598 0.67 +1.6
240,988 - GFF4598 0.67 +0.9
240,988 - GFF4598 0.67 +0.9
241,092 + GFF4598 0.73 +0.5
241,093 - GFF4598 0.73 +1.4
241,311 + GFF4598 0.85 +0.2
241,312 - GFF4598 0.85 +0.7
241,470 + -0.7
241,470 + -0.0
241,470 + -0.2
241,470 + +0.3
241,470 + +0.5
241,482 + -0.9
241,638 + +0.4
241,805 - GFF4599 0.41 -0.8
241,888 + GFF4599 0.61 -0.7
241,889 - GFF4599 0.61 +1.1
241,972 + GFF4599 0.80 -0.1
241,972 + GFF4599 0.80 -0.3
241,972 + GFF4599 0.80 -1.6
241,972 + GFF4599 0.80 -0.0
241,972 + GFF4599 0.80 +0.1
241,973 - GFF4599 0.81 -1.6
241,973 - GFF4599 0.81 -1.5
241,973 - GFF4599 0.81 -0.7
241,973 - GFF4599 0.81 +0.4
241,973 - GFF4599 0.81 +0.8
242,002 + GFF4599 0.87 -0.3
242,002 + GFF4599 0.87 +0.3
242,002 + GFF4599 0.87 -0.1
242,002 + GFF4599 0.87 +0.4
242,003 - GFF4599 0.88 +0.7
242,003 - GFF4599 0.88 -1.7
242,003 - GFF4599 0.88 +1.3
242,003 - GFF4599 0.88 -0.5
242,003 - GFF4599 0.88 -0.9
242,003 - GFF4599 0.88 -1.1
242,003 - GFF4599 0.88 -1.0
242,003 - GFF4599 0.88 -0.5
242,003 - GFF4599 0.88 -0.7
242,012 + GFF4599 0.90 +1.6
242,012 + GFF4599 0.90 -1.3
242,013 - -0.6
242,013 - -1.2
242,151 + +0.3
242,152 - +0.0
242,152 - -1.4
242,152 - +0.8
242,152 - -0.1
242,332 - GFF4600 0.23 +0.1
242,415 + GFF4600 0.30 -0.0
242,415 + GFF4600 0.30 +0.3
242,415 + GFF4600 0.30 -0.3
242,416 - GFF4600 0.30 -1.2
242,416 - GFF4600 0.30 -0.8
242,466 + GFF4600 0.34 -0.5
242,466 + GFF4600 0.34 -0.6
242,466 + GFF4600 0.34 -2.3
242,466 + GFF4600 0.34 +0.1
242,466 + GFF4600 0.34 -2.4
242,466 + GFF4600 0.34 -0.9
242,466 + GFF4600 0.34 -0.9
242,466 + GFF4600 0.34 -0.2
242,467 - GFF4600 0.34 -0.1
242,467 - GFF4600 0.34 +0.3
242,467 - GFF4600 0.34 +0.8
242,622 + GFF4600 0.47 -1.9
242,622 + GFF4600 0.47 +0.5
242,623 - GFF4600 0.47 +0.1
242,623 - GFF4600 0.47 -0.7
242,623 - GFF4600 0.47 -2.3
242,623 - GFF4600 0.47 -0.6
242,733 + GFF4600 0.57 +0.1
242,734 - GFF4600 0.57 -0.5
242,734 - GFF4600 0.57 -0.5
242,922 + GFF4600 0.73 -0.5
242,923 - GFF4600 0.73 +1.2

Or see this region's nucleotide sequence