Strain Fitness in Variovorax sp. SCN45 around GFF4590

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4589 and GFF4590 are separated by 53 nucleotidesGFF4590 and GFF4591 are separated by 27 nucleotidesGFF4591 and GFF4592 are separated by 1 nucleotides GFF4589 - no description, at 230,063 to 231,118 GFF4589 GFF4590 - Glutamate/aspartate ABC transporter, ATP-binding protein GltL (TC 3.A.1.3.4), at 231,172 to 231,921 GFF4590 GFF4591 - Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4), at 231,949 to 232,617 GFF4591 GFF4592 - Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4), at 232,619 to 233,377 GFF4592 Position (kb) 231 232Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 230.204 kb on + strand, within GFF4589at 230.204 kb on + strand, within GFF4589at 230.205 kb on - strand, within GFF4589at 230.205 kb on - strand, within GFF4589at 230.207 kb on + strand, within GFF4589at 230.234 kb on - strand, within GFF4589at 230.379 kb on - strand, within GFF4589at 230.379 kb on - strand, within GFF4589at 230.453 kb on + strand, within GFF4589at 230.453 kb on + strand, within GFF4589at 230.454 kb on - strand, within GFF4589at 230.454 kb on - strand, within GFF4589at 230.586 kb on - strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.858 kb on + strand, within GFF4589at 230.859 kb on - strand, within GFF4589at 230.859 kb on - strand, within GFF4589at 230.859 kb on - strand, within GFF4589at 230.859 kb on - strand, within GFF4589at 231.057 kb on + strandat 231.878 kb on + strandat 231.879 kb on - strandat 231.889 kb on + strandat 231.889 kb on + strandat 231.889 kb on + strandat 231.889 kb on + strandat 231.889 kb on + strandat 231.890 kb on - strandat 232.004 kb on + strandat 232.004 kb on + strandat 232.005 kb on - strandat 232.019 kb on + strand, within GFF4591at 232.020 kb on - strand, within GFF4591at 232.040 kb on + strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.041 kb on - strand, within GFF4591at 232.115 kb on + strand, within GFF4591at 232.116 kb on - strand, within GFF4591at 232.116 kb on - strand, within GFF4591at 232.116 kb on - strand, within GFF4591at 232.116 kb on - strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.220 kb on + strand, within GFF4591at 232.221 kb on - strand, within GFF4591at 232.221 kb on - strand, within GFF4591at 232.221 kb on - strand, within GFF4591at 232.301 kb on + strand, within GFF4591at 232.301 kb on + strand, within GFF4591at 232.301 kb on + strand, within GFF4591at 232.302 kb on - strand, within GFF4591at 232.302 kb on - strand, within GFF4591at 232.302 kb on - strand, within GFF4591at 232.323 kb on - strand, within GFF4591at 232.436 kb on + strand, within GFF4591at 232.437 kb on - strand, within GFF4591at 232.437 kb on - strand, within GFF4591at 232.550 kb on + strand, within GFF4591at 232.550 kb on + strand, within GFF4591at 232.551 kb on - strandat 232.551 kb on - strandat 232.551 kb on - strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.568 kb on + strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.569 kb on - strandat 232.592 kb on + strandat 232.592 kb on + strandat 232.592 kb on + strandat 232.592 kb on + strandat 232.593 kb on - strandat 232.593 kb on - strandat 232.719 kb on + strand, within GFF4592at 232.719 kb on + strand, within GFF4592at 232.719 kb on + strand, within GFF4592at 232.719 kb on + strand, within GFF4592at 232.719 kb on + strand, within GFF4592at 232.719 kb on + strand, within GFF4592at 232.719 kb on + strand, within GFF4592at 232.719 kb on + strand, within GFF4592at 232.719 kb on + strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.720 kb on - strand, within GFF4592at 232.740 kb on + strand, within GFF4592at 232.740 kb on + strand, within GFF4592at 232.741 kb on - strand, within GFF4592at 232.741 kb on - strand, within GFF4592at 232.782 kb on + strand, within GFF4592at 232.782 kb on + strand, within GFF4592at 232.908 kb on + strand, within GFF4592at 232.908 kb on + strand, within GFF4592at 232.908 kb on + strand, within GFF4592at 232.908 kb on + strand, within GFF4592at 232.909 kb on - strand, within GFF4592at 232.909 kb on - strand, within GFF4592at 232.911 kb on + strand, within GFF4592at 232.911 kb on + strand, within GFF4592at 232.911 kb on + strand, within GFF4592at 232.911 kb on + strand, within GFF4592at 232.911 kb on + strand, within GFF4592at 232.911 kb on + strand, within GFF4592at 232.911 kb on + strand, within GFF4592at 232.911 kb on + strand, within GFF4592at 232.912 kb on - strand, within GFF4592at 232.912 kb on - strand, within GFF4592at 232.912 kb on - strand, within GFF4592

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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230,204 + GFF4589 0.13 -0.2
230,204 + GFF4589 0.13 -0.9
230,205 - GFF4589 0.13 -1.4
230,205 - GFF4589 0.13 -0.1
230,207 + GFF4589 0.14 -0.7
230,234 - GFF4589 0.16 -0.5
230,379 - GFF4589 0.30 -0.9
230,379 - GFF4589 0.30 +0.1
230,453 + GFF4589 0.37 -0.6
230,453 + GFF4589 0.37 -0.2
230,454 - GFF4589 0.37 -0.7
230,454 - GFF4589 0.37 +0.5
230,586 - GFF4589 0.50 -1.4
230,858 + GFF4589 0.75 +0.4
230,858 + GFF4589 0.75 -0.6
230,858 + GFF4589 0.75 +0.5
230,858 + GFF4589 0.75 -1.3
230,858 + GFF4589 0.75 -0.4
230,858 + GFF4589 0.75 +0.6
230,858 + GFF4589 0.75 +0.2
230,858 + GFF4589 0.75 +1.3
230,859 - GFF4589 0.75 -0.1
230,859 - GFF4589 0.75 +0.6
230,859 - GFF4589 0.75 -0.1
230,859 - GFF4589 0.75 +1.2
231,057 + +0.1
231,878 + +0.2
231,879 - +0.5
231,889 + +0.4
231,889 + +1.1
231,889 + -0.5
231,889 + +0.3
231,889 + +0.0
231,890 - -0.2
232,004 + -0.7
232,004 + -0.8
232,005 - -0.9
232,019 + GFF4591 0.10 +0.2
232,020 - GFF4591 0.11 -0.7
232,040 + GFF4591 0.14 +0.1
232,041 - GFF4591 0.14 +2.0
232,041 - GFF4591 0.14 -0.4
232,041 - GFF4591 0.14 -0.5
232,041 - GFF4591 0.14 +0.3
232,041 - GFF4591 0.14 -0.9
232,115 + GFF4591 0.25 -0.3
232,116 - GFF4591 0.25 +0.6
232,116 - GFF4591 0.25 -0.5
232,116 - GFF4591 0.25 -1.3
232,116 - GFF4591 0.25 +1.6
232,220 + GFF4591 0.41 -1.1
232,220 + GFF4591 0.41 -0.3
232,220 + GFF4591 0.41 +0.1
232,220 + GFF4591 0.41 -0.9
232,220 + GFF4591 0.41 +0.1
232,220 + GFF4591 0.41 -1.1
232,220 + GFF4591 0.41 -0.0
232,220 + GFF4591 0.41 -0.6
232,220 + GFF4591 0.41 -1.1
232,220 + GFF4591 0.41 +0.3
232,221 - GFF4591 0.41 -0.1
232,221 - GFF4591 0.41 -0.1
232,221 - GFF4591 0.41 -0.5
232,301 + GFF4591 0.53 -0.9
232,301 + GFF4591 0.53 -0.1
232,301 + GFF4591 0.53 -1.2
232,302 - GFF4591 0.53 +0.1
232,302 - GFF4591 0.53 -0.4
232,302 - GFF4591 0.53 -0.2
232,323 - GFF4591 0.56 +0.1
232,436 + GFF4591 0.73 +0.4
232,437 - GFF4591 0.73 -0.5
232,437 - GFF4591 0.73 +0.1
232,550 + GFF4591 0.90 +0.8
232,550 + GFF4591 0.90 +0.5
232,551 - -0.8
232,551 - -0.3
232,551 - +0.3
232,568 + -0.6
232,568 + +0.2
232,568 + +1.1
232,568 + +0.6
232,568 + -1.0
232,568 + -0.1
232,568 + -1.5
232,568 + -1.1
232,568 + +0.1
232,568 + +0.6
232,568 + -0.8
232,568 + -0.6
232,568 + -0.7
232,568 + +0.5
232,568 + -0.2
232,568 + -0.9
232,568 + -1.2
232,568 + -0.2
232,568 + -1.0
232,568 + -0.4
232,568 + -1.7
232,569 - +0.1
232,569 - -0.7
232,569 - +0.3
232,569 - -2.9
232,569 - -0.4
232,569 - -0.3
232,569 - +0.0
232,569 - +0.2
232,569 - -0.6
232,569 - +0.9
232,569 - -1.1
232,569 - -1.1
232,569 - -0.1
232,569 - +0.3
232,569 - -0.5
232,592 + -0.3
232,592 + -0.6
232,592 + +0.1
232,592 + -0.2
232,593 - +1.2
232,593 - -0.7
232,719 + GFF4592 0.13 -1.3
232,719 + GFF4592 0.13 -1.0
232,719 + GFF4592 0.13 +0.6
232,719 + GFF4592 0.13 +0.2
232,719 + GFF4592 0.13 -0.4
232,719 + GFF4592 0.13 -0.5
232,719 + GFF4592 0.13 -0.5
232,719 + GFF4592 0.13 -0.4
232,719 + GFF4592 0.13 -0.7
232,720 - GFF4592 0.13 +1.3
232,720 - GFF4592 0.13 +0.4
232,720 - GFF4592 0.13 +0.5
232,720 - GFF4592 0.13 -0.1
232,720 - GFF4592 0.13 -0.4
232,720 - GFF4592 0.13 -1.1
232,720 - GFF4592 0.13 +0.3
232,720 - GFF4592 0.13 -0.9
232,720 - GFF4592 0.13 -1.2
232,720 - GFF4592 0.13 +0.4
232,740 + GFF4592 0.16 -0.4
232,740 + GFF4592 0.16 +0.3
232,741 - GFF4592 0.16 -1.2
232,741 - GFF4592 0.16 -0.7
232,782 + GFF4592 0.21 +0.2
232,782 + GFF4592 0.21 -0.9
232,908 + GFF4592 0.38 -0.8
232,908 + GFF4592 0.38 -0.1
232,908 + GFF4592 0.38 -1.0
232,908 + GFF4592 0.38 +0.4
232,909 - GFF4592 0.38 +0.9
232,909 - GFF4592 0.38 -0.4
232,911 + GFF4592 0.38 -0.8
232,911 + GFF4592 0.38 -1.6
232,911 + GFF4592 0.38 -0.5
232,911 + GFF4592 0.38 -0.6
232,911 + GFF4592 0.38 -0.5
232,911 + GFF4592 0.38 +2.6
232,911 + GFF4592 0.38 +0.4
232,911 + GFF4592 0.38 +0.1
232,912 - GFF4592 0.39 +1.5
232,912 - GFF4592 0.39 -0.6
232,912 - GFF4592 0.39 -0.1

Or see this region's nucleotide sequence