Strain Fitness in Variovorax sp. SCN45 around GFF4577

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
215,520	+				+1.1
215,703	+		GFF4576	0.28	-0.4
215,800	-		GFF4576	0.38	-1.4
215,877	+		GFF4576	0.46	-0.8
215,908	-		GFF4576	0.49	-0.4
215,994	+		GFF4576	0.57	-0.3
215,994	+		GFF4576	0.57	-0.7
215,995	-		GFF4576	0.57	-0.3
215,995	-		GFF4576	0.57	-0.1
215,995	-		GFF4576	0.57	-0.9
216,051	+		GFF4576	0.63	+2.1
216,361	-				+0.1
216,361	-				+0.5
216,361	-				+1.1
216,361	-				+0.5
216,420	+				-0.1
216,421	-				-0.1
216,421	-				+0.7
216,421	-				-0.6
216,421	-				-0.5
216,498	-				+2.9
217,243	+				-0.4
217,373	-				-0.7
217,608	-		GFF4578	0.27	-0.1
218,119	+		GFF4578	0.82	+0.3
218,120	+		GFF4578	0.82	-0.4
218,120	+		GFF4578	0.82	-0.4
218,120	+		GFF4578	0.82	+0.2
218,120	+		GFF4578	0.82	+1.2