Strain Fitness in Variovorax sp. SCN45 around GFF4497

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4496 and GFF4497 overlap by 8 nucleotidesGFF4497 and GFF4498 are separated by 8 nucleotides GFF4496 - Uncharacterized MFS-type transporter, at 139,940 to 141,517 GFF4496 GFF4497 - FIG027115: Membrane protein, at 141,510 to 141,908 GFF4497 GFF4498 - Exoenzymes regulatory protein AepA precursor, at 141,917 to 143,911 GFF4498 Position (kb) 141 142Strain fitness (log2 ratio) -2 -1 0 1at 140.733 kb on + strand, within GFF4496at 140.863 kb on - strand, within GFF4496at 140.863 kb on - strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.964 kb on + strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.965 kb on - strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.985 kb on + strand, within GFF4496at 140.986 kb on - strand, within GFF4496at 140.986 kb on - strand, within GFF4496at 141.186 kb on + strand, within GFF4496at 141.187 kb on + strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.187 kb on - strand, within GFF4496at 141.589 kb on + strand, within GFF4497at 141.847 kb on + strand, within GFF4497at 141.848 kb on - strand, within GFF4497at 141.848 kb on - strand, within GFF4497at 141.848 kb on - strand, within GFF4497at 142.110 kb on + strandat 142.111 kb on - strandat 142.197 kb on + strand, within GFF4498at 142.197 kb on + strand, within GFF4498at 142.197 kb on + strand, within GFF4498at 142.197 kb on + strand, within GFF4498at 142.198 kb on - strand, within GFF4498at 142.473 kb on + strand, within GFF4498at 142.473 kb on + strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.474 kb on - strand, within GFF4498at 142.573 kb on - strand, within GFF4498at 142.588 kb on - strand, within GFF4498at 142.588 kb on - strand, within GFF4498at 142.588 kb on - strand, within GFF4498at 142.599 kb on + strand, within GFF4498at 142.599 kb on + strand, within GFF4498at 142.667 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.715 kb on - strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.767 kb on + strand, within GFF4498at 142.768 kb on - strand, within GFF4498at 142.768 kb on - strand, within GFF4498at 142.768 kb on - strand, within GFF4498

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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140,733 + GFF4496 0.50 -0.3
140,863 - GFF4496 0.58 -0.2
140,863 - GFF4496 0.58 -0.5
140,964 + GFF4496 0.65 -1.8
140,964 + GFF4496 0.65 -0.0
140,964 + GFF4496 0.65 -0.8
140,964 + GFF4496 0.65 +0.6
140,964 + GFF4496 0.65 -0.7
140,964 + GFF4496 0.65 +0.4
140,964 + GFF4496 0.65 -0.1
140,964 + GFF4496 0.65 -0.4
140,965 - GFF4496 0.65 +0.3
140,965 - GFF4496 0.65 +0.2
140,965 - GFF4496 0.65 -0.4
140,965 - GFF4496 0.65 +0.2
140,965 - GFF4496 0.65 -0.1
140,965 - GFF4496 0.65 +0.7
140,965 - GFF4496 0.65 -0.1
140,965 - GFF4496 0.65 -0.0
140,965 - GFF4496 0.65 -0.1
140,965 - GFF4496 0.65 +0.6
140,965 - GFF4496 0.65 +0.4
140,965 - GFF4496 0.65 -0.4
140,965 - GFF4496 0.65 -0.4
140,985 + GFF4496 0.66 -1.0
140,985 + GFF4496 0.66 -0.6
140,985 + GFF4496 0.66 -0.5
140,985 + GFF4496 0.66 +0.3
140,985 + GFF4496 0.66 -0.0
140,986 - GFF4496 0.66 -0.7
140,986 - GFF4496 0.66 +0.1
141,186 + GFF4496 0.79 -0.5
141,187 + GFF4496 0.79 +0.8
141,187 - GFF4496 0.79 -1.2
141,187 - GFF4496 0.79 -0.6
141,187 - GFF4496 0.79 -0.3
141,187 - GFF4496 0.79 -0.3
141,187 - GFF4496 0.79 -0.6
141,589 + GFF4497 0.20 +0.2
141,847 + GFF4497 0.84 +0.0
141,848 - GFF4497 0.85 -0.2
141,848 - GFF4497 0.85 +0.8
141,848 - GFF4497 0.85 +0.5
142,110 + -0.6
142,111 - -0.2
142,197 + GFF4498 0.14 -0.1
142,197 + GFF4498 0.14 +0.2
142,197 + GFF4498 0.14 +0.1
142,197 + GFF4498 0.14 -0.0
142,198 - GFF4498 0.14 -1.2
142,473 + GFF4498 0.28 -0.4
142,473 + GFF4498 0.28 -0.1
142,474 - GFF4498 0.28 +0.5
142,474 - GFF4498 0.28 +0.5
142,474 - GFF4498 0.28 -0.9
142,474 - GFF4498 0.28 +0.6
142,474 - GFF4498 0.28 -0.6
142,474 - GFF4498 0.28 -0.5
142,474 - GFF4498 0.28 +1.6
142,573 - GFF4498 0.33 +0.8
142,588 - GFF4498 0.34 -0.6
142,588 - GFF4498 0.34 -1.4
142,588 - GFF4498 0.34 +0.3
142,599 + GFF4498 0.34 +0.5
142,599 + GFF4498 0.34 -0.5
142,667 - GFF4498 0.38 -0.1
142,715 - GFF4498 0.40 +0.6
142,715 - GFF4498 0.40 +0.7
142,715 - GFF4498 0.40 +0.6
142,715 - GFF4498 0.40 +0.4
142,715 - GFF4498 0.40 -0.5
142,767 + GFF4498 0.43 -0.1
142,767 + GFF4498 0.43 -0.4
142,767 + GFF4498 0.43 +1.1
142,767 + GFF4498 0.43 -1.0
142,767 + GFF4498 0.43 +0.0
142,768 - GFF4498 0.43 +0.4
142,768 - GFF4498 0.43 +0.6
142,768 - GFF4498 0.43 +0.6

Or see this region's nucleotide sequence