Strain Fitness in Variovorax sp. SCN45 around GFF4486

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
129,247	+		GFF4485	0.53	-0.9
129,247	+		GFF4485	0.53	-0.9
129,247	+		GFF4485	0.53	-1.2
129,247	+		GFF4485	0.53	-0.8
129,247	+		GFF4485	0.53	-0.4
129,248	-		GFF4485	0.53	-0.7
129,248	-		GFF4485	0.53	-0.9
129,248	-		GFF4485	0.53	-0.1
129,248	-		GFF4485	0.53	-0.3
129,248	-		GFF4485	0.53	-1.2
129,248	-		GFF4485	0.53	-1.8
129,295	+		GFF4485	0.56	-1.7
129,295	+		GFF4485	0.56	-0.6
129,295	+		GFF4485	0.56	-1.4
129,295	+		GFF4485	0.56	-0.3
129,296	-		GFF4485	0.56	+0.2
129,296	-		GFF4485	0.56	-0.8
129,296	-		GFF4485	0.56	-0.4
129,296	-		GFF4485	0.56	-0.7
129,296	-		GFF4485	0.56	-0.9
129,910	+				-0.2
129,910	+				-1.9
129,910	+				-0.4
129,910	+				-0.9
129,910	+				-1.5
129,910	+				-1.9
129,910	+				-1.4
129,910	+				-1.0
129,911	-				-1.3
129,911	-				-1.3
129,911	-				-0.3
129,911	-				+0.1
129,911	-				-0.8
129,911	-				-1.0
129,911	-				-0.1
129,911	-				-0.3
129,911	-				-0.7
129,911	-				-2.4
129,911	-				-0.4
130,435	+		GFF4486	0.53	+0.1
131,182	+				+0.2
131,182	+				+0.9
131,182	+				+0.7
131,182	+				-0.5
131,182	+				+0.3
131,182	+				-0.5
131,182	+				-0.6
131,183	-				-0.3
131,183	-				-0.9
131,183	-				+0.3
131,183	-				-0.3
131,184	+				+0.4
131,184	+				+2.1
131,184	+				+1.2
131,184	+				+0.4
131,184	+				-0.6
131,184	+				-0.7
131,184	+				+0.4
131,184	+				-2.4
131,184	+				+0.3
131,184	+				-0.5
131,185	-				-0.0
131,185	-				-0.5
131,185	-				+0.4
131,185	-				-0.4
131,185	-				+1.2
131,185	-				-1.2
131,185	-				+0.6
131,185	-				-1.5
131,255	+				-0.5
131,255	+				+1.1
131,255	+				-0.7
131,255	+				+1.0
131,256	-				+0.1
131,283	+				-0.5
131,283	+				+1.4
131,283	+				+1.0
131,283	+				-0.5
131,283	+				+0.1
131,283	+				-1.0
131,283	+				+1.1
131,283	+				+0.3
131,283	+				-1.0
131,283	+				-1.8
131,283	+				-1.2
131,283	+				+0.6
131,283	+				+0.6
131,284	-				+0.3
131,284	-				+0.1
131,284	-				+0.2
131,284	-				-1.3
131,284	-				-0.2
131,284	-				+0.5
131,286	-				-1.2
131,286	-				+0.2
131,286	-				+0.2
131,335	+				-0.2
131,335	+				-0.0
131,335	+				+0.3
131,335	+				+0.6
131,336	-				-0.4
131,336	-				-0.3
131,336	-				+1.5
131,451	+				+1.1
131,451	+				-0.5
131,452	-				+0.3
131,452	-				-1.8
131,452	-				-0.5
131,452	-				-0.1
131,452	-				-0.2
131,452	-				-1.0
131,486	+				-0.3
131,486	+				+0.1
131,532	-				+1.5
131,594	+				-0.5
131,594	+				+1.0
131,594	+				+0.6
131,595	-				+0.3
131,595	-				-0.3
131,595	-				+0.3