Strain Fitness in Variovorax sp. SCN45 around GFF4480

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4479 and GFF4480 overlap by 4 nucleotidesGFF4480 and GFF4481 are separated by 2 nucleotidesGFF4481 and GFF4482 are separated by 8 nucleotides GFF4479 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 122,675 to 124,429 GFF4479 GFF4480 - Cell division protein FtsL, at 124,426 to 124,797 GFF4480 GFF4481 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199), at 124,800 to 125,723 GFF4481 GFF4482 - Transcriptional regulator MraZ, at 125,732 to 126,166 GFF4482 Position (kb) 124 125Strain fitness (log2 ratio) -1 0 1at 125.059 kb on - strand, within GFF4481

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
125,059 - GFF4481 0.28 -1.2

Or see this region's nucleotide sequence