Strain Fitness in Variovorax sp. SCN45 around GFF4464

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
104,660	+		GFF4463	0.31	-0.2
104,660	+		GFF4463	0.31	-0.1
104,660	+		GFF4463	0.31	-0.0
104,661	-		GFF4463	0.31	-0.8
104,661	-		GFF4463	0.31	-0.8
104,828	+		GFF4463	0.44	-0.5
104,828	+		GFF4463	0.44	-0.3
104,828	+		GFF4463	0.44	-0.1
104,828	+		GFF4463	0.44	-1.0
104,829	-		GFF4463	0.44	-0.0
104,829	-		GFF4463	0.44	-0.4
104,829	-		GFF4463	0.44	-0.1
105,062	+		GFF4463	0.63	+0.8
105,206	+		GFF4463	0.74	-1.0
105,206	+		GFF4463	0.74	+1.5
105,207	-		GFF4463	0.74	-0.4
105,207	-		GFF4463	0.74	+0.0
105,326	+		GFF4463	0.84	+0.5
105,326	+		GFF4463	0.84	-1.0
105,327	-		GFF4463	0.84	-0.9
105,327	-		GFF4463	0.84	+1.2
105,327	-		GFF4463	0.84	+1.1
105,903	-		GFF4465	0.20	-0.4
105,903	-		GFF4465	0.20	+0.3
105,903	-		GFF4465	0.20	-0.4
105,903	-		GFF4465	0.20	-0.7
106,175	-		GFF4465	0.49	+0.2
106,453	+		GFF4465	0.78	+0.3
106,453	+		GFF4465	0.78	+0.5