Strain Fitness in Variovorax sp. SCN45 around GFF4450

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4449 and GFF4450 are separated by 47 nucleotidesGFF4450 and GFF4451 are separated by 32 nucleotides GFF4449 - TldD protein, part of TldE/TldD proteolytic complex, at 88,227 to 89,696 GFF4449 GFF4450 - Rod shape-determining protein RodA, at 89,744 to 90,898 GFF4450 GFF4451 - Permease of the drug/metabolite transporter (DMT) superfamily, at 90,931 to 92,772 GFF4451 Position (kb) 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 88.996 kb on + strand, within GFF4449at 88.996 kb on + strand, within GFF4449at 88.997 kb on - strand, within GFF4449at 88.997 kb on - strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.023 kb on + strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.024 kb on - strand, within GFF4449at 89.170 kb on + strand, within GFF4449at 89.171 kb on - strand, within GFF4449at 89.171 kb on - strand, within GFF4449at 89.171 kb on - strand, within GFF4449at 89.171 kb on - strand, within GFF4449at 89.171 kb on - strand, within GFF4449at 89.171 kb on - strand, within GFF4449at 89.299 kb on + strand, within GFF4449at 89.300 kb on - strand, within GFF4449at 89.300 kb on - strand, within GFF4449at 89.300 kb on - strand, within GFF4449at 89.300 kb on - strand, within GFF4449at 89.300 kb on - strand, within GFF4449at 89.300 kb on - strand, within GFF4449at 89.300 kb on - strand, within GFF4449at 89.539 kb on + strand, within GFF4449at 89.539 kb on + strand, within GFF4449at 89.539 kb on + strand, within GFF4449at 89.539 kb on + strand, within GFF4449at 89.539 kb on + strand, within GFF4449at 89.539 kb on + strand, within GFF4449at 89.539 kb on + strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.540 kb on - strand, within GFF4449at 89.548 kb on + strand, within GFF4449at 89.548 kb on + strand, within GFF4449at 89.548 kb on + strand, within GFF4449at 89.548 kb on + strand, within GFF4449at 89.548 kb on + strand, within GFF4449at 89.548 kb on + strand, within GFF4449at 89.548 kb on + strand, within GFF4449at 89.549 kb on - strand, within GFF4449at 89.549 kb on - strand, within GFF4449at 89.549 kb on - strand, within GFF4449at 89.549 kb on - strand, within GFF4449at 89.549 kb on - strand, within GFF4449at 89.699 kb on + strandat 89.699 kb on + strandat 89.700 kb on - strandat 89.700 kb on - strandat 89.745 kb on + strandat 89.745 kb on + strandat 89.745 kb on + strandat 89.745 kb on + strandat 89.745 kb on + strandat 89.745 kb on + strandat 89.745 kb on + strandat 89.746 kb on - strandat 89.746 kb on - strandat 89.746 kb on - strandat 89.746 kb on - strandat 89.746 kb on - strandat 89.746 kb on - strandat 91.043 kb on + strandat 91.043 kb on + strandat 91.044 kb on - strandat 91.044 kb on - strandat 91.156 kb on + strand, within GFF4451at 91.156 kb on + strand, within GFF4451at 91.231 kb on + strand, within GFF4451at 91.272 kb on - strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.517 kb on + strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.518 kb on - strand, within GFF4451at 91.655 kb on + strand, within GFF4451at 91.656 kb on - strand, within GFF4451at 91.680 kb on - strand, within GFF4451

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
88,996 + GFF4449 0.52 -0.1
88,996 + GFF4449 0.52 +0.4
88,997 - GFF4449 0.52 -0.4
88,997 - GFF4449 0.52 -0.0
89,023 + GFF4449 0.54 -0.8
89,023 + GFF4449 0.54 -0.1
89,023 + GFF4449 0.54 -0.6
89,023 + GFF4449 0.54 -0.2
89,023 + GFF4449 0.54 -0.7
89,023 + GFF4449 0.54 +0.0
89,023 + GFF4449 0.54 -1.2
89,023 + GFF4449 0.54 -0.2
89,023 + GFF4449 0.54 -1.5
89,024 - GFF4449 0.54 -0.4
89,024 - GFF4449 0.54 -0.9
89,024 - GFF4449 0.54 +1.0
89,024 - GFF4449 0.54 +0.6
89,024 - GFF4449 0.54 +0.1
89,024 - GFF4449 0.54 -0.6
89,024 - GFF4449 0.54 +0.4
89,024 - GFF4449 0.54 -1.4
89,024 - GFF4449 0.54 -0.9
89,024 - GFF4449 0.54 -1.2
89,024 - GFF4449 0.54 -0.5
89,024 - GFF4449 0.54 +0.9
89,024 - GFF4449 0.54 -0.8
89,024 - GFF4449 0.54 +0.5
89,024 - GFF4449 0.54 -0.5
89,024 - GFF4449 0.54 +0.0
89,024 - GFF4449 0.54 -1.1
89,024 - GFF4449 0.54 -1.2
89,024 - GFF4449 0.54 +0.2
89,024 - GFF4449 0.54 +0.2
89,024 - GFF4449 0.54 -0.9
89,024 - GFF4449 0.54 -0.2
89,170 + GFF4449 0.64 -0.1
89,171 - GFF4449 0.64 -0.4
89,171 - GFF4449 0.64 -0.9
89,171 - GFF4449 0.64 -0.1
89,171 - GFF4449 0.64 -0.6
89,171 - GFF4449 0.64 +0.3
89,171 - GFF4449 0.64 -0.9
89,299 + GFF4449 0.73 -0.7
89,300 - GFF4449 0.73 -0.4
89,300 - GFF4449 0.73 -0.1
89,300 - GFF4449 0.73 -0.4
89,300 - GFF4449 0.73 +0.6
89,300 - GFF4449 0.73 +1.1
89,300 - GFF4449 0.73 +0.9
89,300 - GFF4449 0.73 +0.1
89,539 + GFF4449 0.89 +0.2
89,539 + GFF4449 0.89 -0.2
89,539 + GFF4449 0.89 -0.2
89,539 + GFF4449 0.89 +0.5
89,539 + GFF4449 0.89 -0.6
89,539 + GFF4449 0.89 -0.4
89,539 + GFF4449 0.89 -0.1
89,540 - GFF4449 0.89 -0.1
89,540 - GFF4449 0.89 +0.3
89,540 - GFF4449 0.89 +0.2
89,540 - GFF4449 0.89 +0.8
89,540 - GFF4449 0.89 -0.0
89,540 - GFF4449 0.89 +0.1
89,540 - GFF4449 0.89 -0.7
89,540 - GFF4449 0.89 -0.9
89,540 - GFF4449 0.89 +0.1
89,548 + GFF4449 0.90 +0.2
89,548 + GFF4449 0.90 +0.1
89,548 + GFF4449 0.90 -0.8
89,548 + GFF4449 0.90 -0.3
89,548 + GFF4449 0.90 -1.7
89,548 + GFF4449 0.90 -0.4
89,548 + GFF4449 0.90 -0.7
89,549 - GFF4449 0.90 +0.3
89,549 - GFF4449 0.90 +0.1
89,549 - GFF4449 0.90 -1.4
89,549 - GFF4449 0.90 -1.1
89,549 - GFF4449 0.90 +1.9
89,699 + +0.1
89,699 + -0.9
89,700 - +0.0
89,700 - -2.2
89,745 + +1.4
89,745 + -0.6
89,745 + -0.4
89,745 + +1.1
89,745 + +0.2
89,745 + +0.5
89,745 + +0.5
89,746 - -0.2
89,746 - +0.3
89,746 - -0.1
89,746 - -0.3
89,746 - +2.6
89,746 - +0.4
91,043 + -0.7
91,043 + +0.2
91,044 - -0.9
91,044 - -0.1
91,156 + GFF4451 0.12 -0.1
91,156 + GFF4451 0.12 -1.1
91,231 + GFF4451 0.16 -0.1
91,272 - GFF4451 0.19 -1.3
91,517 + GFF4451 0.32 +0.7
91,517 + GFF4451 0.32 -0.5
91,517 + GFF4451 0.32 +0.3
91,517 + GFF4451 0.32 -0.2
91,517 + GFF4451 0.32 +0.1
91,517 + GFF4451 0.32 +0.6
91,517 + GFF4451 0.32 -0.1
91,518 - GFF4451 0.32 +0.9
91,518 - GFF4451 0.32 -0.7
91,518 - GFF4451 0.32 -1.6
91,518 - GFF4451 0.32 -0.9
91,518 - GFF4451 0.32 +0.5
91,518 - GFF4451 0.32 -0.5
91,518 - GFF4451 0.32 -0.5
91,518 - GFF4451 0.32 -0.4
91,518 - GFF4451 0.32 +1.1
91,518 - GFF4451 0.32 -0.9
91,518 - GFF4451 0.32 +0.9
91,518 - GFF4451 0.32 -0.9
91,518 - GFF4451 0.32 -1.5
91,655 + GFF4451 0.39 -1.2
91,656 - GFF4451 0.39 +0.3
91,680 - GFF4451 0.41 +0.9

Or see this region's nucleotide sequence