Strain Fitness in Variovorax sp. SCN45 around GFF4442

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4441 and GFF4442 are separated by 2 nucleotidesGFF4442 and GFF4443 are separated by 100 nucleotidesGFF4443 and GFF4444 are separated by 0 nucleotides GFF4441 - Biotin carboxylase of acetyl-CoA carboxylase (EC 6.3.4.14), at 81,158 to 82,507 GFF4441 GFF4442 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 82,510 to 82,977 GFF4442 GFF4443 - Cytochrome c-type biogenesis protein ResA, at 83,078 to 83,632 GFF4443 GFF4444 - Predicted nucleotidyltransferase, at 83,633 to 84,229 GFF4444 Position (kb) 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 83.015 kb on - strandat 83.079 kb on + strandat 83.080 kb on - strandat 83.080 kb on - strandat 83.140 kb on + strand, within GFF4443at 83.140 kb on + strand, within GFF4443at 83.141 kb on - strand, within GFF4443at 83.141 kb on - strand, within GFF4443at 83.171 kb on + strand, within GFF4443at 83.171 kb on + strand, within GFF4443at 83.171 kb on + strand, within GFF4443at 83.172 kb on - strand, within GFF4443at 83.172 kb on - strand, within GFF4443at 83.172 kb on - strand, within GFF4443at 83.200 kb on + strand, within GFF4443at 83.200 kb on + strand, within GFF4443at 83.200 kb on + strand, within GFF4443at 83.201 kb on - strand, within GFF4443at 83.201 kb on - strand, within GFF4443at 83.201 kb on - strand, within GFF4443at 83.201 kb on - strand, within GFF4443at 83.256 kb on + strand, within GFF4443at 83.256 kb on + strand, within GFF4443at 83.256 kb on + strand, within GFF4443at 83.256 kb on + strand, within GFF4443at 83.257 kb on - strand, within GFF4443at 83.257 kb on - strand, within GFF4443at 83.257 kb on - strand, within GFF4443at 83.257 kb on - strand, within GFF4443at 83.257 kb on - strand, within GFF4443at 83.257 kb on - strand, within GFF4443at 83.257 kb on - strand, within GFF4443at 83.257 kb on - strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.401 kb on + strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.402 kb on - strand, within GFF4443at 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.598 kb on + strandat 83.599 kb on - strandat 83.599 kb on - strandat 83.599 kb on - strandat 83.599 kb on - strandat 83.599 kb on - strandat 83.599 kb on - strandat 83.599 kb on - strandat 83.599 kb on - strandat 83.599 kb on - strandat 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.742 kb on + strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.743 kb on - strand, within GFF4444at 83.850 kb on + strand, within GFF4444at 83.850 kb on + strand, within GFF4444at 83.850 kb on + strand, within GFF4444at 83.850 kb on + strand, within GFF4444at 83.851 kb on - strand, within GFF4444at 83.851 kb on - strand, within GFF4444at 83.851 kb on - strand, within GFF4444at 83.851 kb on - strand, within GFF4444at 83.851 kb on - strand, within GFF4444at 83.851 kb on - strand, within GFF4444at 83.914 kb on + strand, within GFF4444at 83.914 kb on + strand, within GFF4444at 83.914 kb on + strand, within GFF4444at 83.914 kb on + strand, within GFF4444at 83.914 kb on + strand, within GFF4444at 83.914 kb on + strand, within GFF4444at 83.914 kb on + strand, within GFF4444at 83.915 kb on - strand, within GFF4444at 83.915 kb on - strand, within GFF4444at 83.915 kb on - strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.916 kb on + strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.917 kb on - strand, within GFF4444at 83.951 kb on + strand, within GFF4444at 83.951 kb on + strand, within GFF4444at 83.952 kb on - strand, within GFF4444at 83.952 kb on - strand, within GFF4444at 83.952 kb on - strand, within GFF4444

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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83,015 - -1.5
83,079 + -0.1
83,080 - +0.1
83,080 - +0.1
83,140 + GFF4443 0.11 -0.4
83,140 + GFF4443 0.11 -0.5
83,141 - GFF4443 0.11 -1.2
83,141 - GFF4443 0.11 +0.5
83,171 + GFF4443 0.17 -0.2
83,171 + GFF4443 0.17 -0.5
83,171 + GFF4443 0.17 -1.2
83,172 - GFF4443 0.17 -0.8
83,172 - GFF4443 0.17 -0.4
83,172 - GFF4443 0.17 -0.5
83,200 + GFF4443 0.22 -0.0
83,200 + GFF4443 0.22 +0.4
83,200 + GFF4443 0.22 -2.1
83,201 - GFF4443 0.22 -0.7
83,201 - GFF4443 0.22 -0.2
83,201 - GFF4443 0.22 +1.6
83,201 - GFF4443 0.22 +0.4
83,256 + GFF4443 0.32 -0.7
83,256 + GFF4443 0.32 -0.4
83,256 + GFF4443 0.32 -0.4
83,256 + GFF4443 0.32 +0.1
83,257 - GFF4443 0.32 -1.4
83,257 - GFF4443 0.32 -1.3
83,257 - GFF4443 0.32 -1.5
83,257 - GFF4443 0.32 -0.2
83,257 - GFF4443 0.32 +1.1
83,257 - GFF4443 0.32 +0.3
83,257 - GFF4443 0.32 -0.2
83,257 - GFF4443 0.32 -1.3
83,401 + GFF4443 0.58 -2.3
83,401 + GFF4443 0.58 +1.2
83,401 + GFF4443 0.58 -0.5
83,401 + GFF4443 0.58 -0.5
83,401 + GFF4443 0.58 -1.6
83,401 + GFF4443 0.58 -0.8
83,401 + GFF4443 0.58 -0.5
83,401 + GFF4443 0.58 -0.4
83,401 + GFF4443 0.58 -0.8
83,401 + GFF4443 0.58 -0.2
83,401 + GFF4443 0.58 -0.6
83,401 + GFF4443 0.58 +0.9
83,402 - GFF4443 0.58 +1.2
83,402 - GFF4443 0.58 -0.8
83,402 - GFF4443 0.58 -1.1
83,402 - GFF4443 0.58 -0.3
83,402 - GFF4443 0.58 +0.5
83,402 - GFF4443 0.58 +0.6
83,402 - GFF4443 0.58 -1.0
83,402 - GFF4443 0.58 +0.1
83,402 - GFF4443 0.58 -1.7
83,402 - GFF4443 0.58 -1.2
83,598 + -1.2
83,598 + -3.0
83,598 + -1.8
83,598 + +0.8
83,598 + -1.3
83,598 + -1.2
83,598 + -0.4
83,598 + -0.6
83,598 + -0.4
83,598 + -0.6
83,598 + -0.2
83,599 - -0.8
83,599 - -0.9
83,599 - -1.3
83,599 - -0.9
83,599 - -0.5
83,599 - -0.2
83,599 - -2.1
83,599 - +0.1
83,599 - +0.2
83,742 + GFF4444 0.18 -0.7
83,742 + GFF4444 0.18 -1.8
83,742 + GFF4444 0.18 -0.8
83,742 + GFF4444 0.18 -0.7
83,742 + GFF4444 0.18 +0.1
83,742 + GFF4444 0.18 +0.8
83,742 + GFF4444 0.18 -1.2
83,742 + GFF4444 0.18 +0.5
83,742 + GFF4444 0.18 +0.7
83,742 + GFF4444 0.18 +0.8
83,742 + GFF4444 0.18 +0.2
83,742 + GFF4444 0.18 +0.2
83,742 + GFF4444 0.18 +0.9
83,742 + GFF4444 0.18 -0.0
83,742 + GFF4444 0.18 -0.7
83,742 + GFF4444 0.18 +0.2
83,742 + GFF4444 0.18 -0.8
83,742 + GFF4444 0.18 -0.1
83,742 + GFF4444 0.18 -1.5
83,742 + GFF4444 0.18 -1.7
83,742 + GFF4444 0.18 -0.2
83,742 + GFF4444 0.18 -0.4
83,743 - GFF4444 0.18 -0.5
83,743 - GFF4444 0.18 +0.1
83,743 - GFF4444 0.18 -0.2
83,743 - GFF4444 0.18 +0.7
83,743 - GFF4444 0.18 -0.6
83,743 - GFF4444 0.18 +0.3
83,743 - GFF4444 0.18 -0.0
83,743 - GFF4444 0.18 +0.5
83,743 - GFF4444 0.18 +0.1
83,743 - GFF4444 0.18 +0.1
83,743 - GFF4444 0.18 +0.6
83,743 - GFF4444 0.18 +0.2
83,743 - GFF4444 0.18 +2.6
83,743 - GFF4444 0.18 +0.2
83,743 - GFF4444 0.18 +0.2
83,743 - GFF4444 0.18 +0.5
83,743 - GFF4444 0.18 +0.1
83,743 - GFF4444 0.18 +0.1
83,743 - GFF4444 0.18 -0.5
83,743 - GFF4444 0.18 +0.1
83,743 - GFF4444 0.18 -0.2
83,743 - GFF4444 0.18 +0.1
83,743 - GFF4444 0.18 -0.2
83,743 - GFF4444 0.18 +0.1
83,743 - GFF4444 0.18 +0.6
83,850 + GFF4444 0.36 -0.1
83,850 + GFF4444 0.36 -0.6
83,850 + GFF4444 0.36 +0.2
83,850 + GFF4444 0.36 -1.5
83,851 - GFF4444 0.37 -0.4
83,851 - GFF4444 0.37 -0.4
83,851 - GFF4444 0.37 +0.3
83,851 - GFF4444 0.37 +1.5
83,851 - GFF4444 0.37 -0.4
83,851 - GFF4444 0.37 +0.0
83,914 + GFF4444 0.47 +0.1
83,914 + GFF4444 0.47 +0.3
83,914 + GFF4444 0.47 -0.4
83,914 + GFF4444 0.47 -0.1
83,914 + GFF4444 0.47 -0.1
83,914 + GFF4444 0.47 +0.1
83,914 + GFF4444 0.47 -0.8
83,915 - GFF4444 0.47 +0.5
83,915 - GFF4444 0.47 -0.0
83,915 - GFF4444 0.47 -1.3
83,916 + GFF4444 0.47 +0.3
83,916 + GFF4444 0.47 -0.1
83,916 + GFF4444 0.47 +0.7
83,916 + GFF4444 0.47 -0.6
83,916 + GFF4444 0.47 -1.1
83,916 + GFF4444 0.47 -0.2
83,916 + GFF4444 0.47 -0.1
83,916 + GFF4444 0.47 +0.8
83,916 + GFF4444 0.47 +0.9
83,916 + GFF4444 0.47 -0.5
83,916 + GFF4444 0.47 -0.9
83,916 + GFF4444 0.47 +0.6
83,916 + GFF4444 0.47 +0.5
83,916 + GFF4444 0.47 -1.2
83,916 + GFF4444 0.47 -0.1
83,916 + GFF4444 0.47 +0.0
83,916 + GFF4444 0.47 +1.2
83,916 + GFF4444 0.47 -0.2
83,916 + GFF4444 0.47 -0.1
83,916 + GFF4444 0.47 -0.4
83,916 + GFF4444 0.47 +0.0
83,917 - GFF4444 0.48 +0.0
83,917 - GFF4444 0.48 +1.1
83,917 - GFF4444 0.48 +0.1
83,917 - GFF4444 0.48 +0.4
83,917 - GFF4444 0.48 -0.6
83,917 - GFF4444 0.48 +0.5
83,917 - GFF4444 0.48 +0.0
83,917 - GFF4444 0.48 -1.2
83,917 - GFF4444 0.48 -1.0
83,917 - GFF4444 0.48 +0.5
83,917 - GFF4444 0.48 +0.2
83,951 + GFF4444 0.53 +1.9
83,951 + GFF4444 0.53 +0.1
83,952 - GFF4444 0.53 +0.1
83,952 - GFF4444 0.53 +0.2
83,952 - GFF4444 0.53 +0.3

Or see this region's nucleotide sequence