Strain Fitness in Variovorax sp. SCN45 around GFF4441

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
80,213	+				-1.0
80,213	+				-0.6
80,213	+				-0.2
80,213	+				-0.4
80,213	+				+0.3
80,213	+				-0.3
80,213	+				-0.1
80,213	+				+1.6
80,213	+				-0.1
80,213	+				-0.1
80,213	+				-0.9
80,213	+				-0.9
80,213	+				+0.3
80,214	-				-0.6
80,214	-				+0.4
80,214	-				-0.2
80,214	-				-0.4
80,214	-				-0.5
80,214	-				-0.2
80,214	-				+0.1
80,214	-				-0.7
80,214	-				+0.0
80,214	-				-0.9
80,214	-				-0.2
80,214	-				-0.0
80,214	-				-1.0
80,316	+				-0.2
80,316	+				+0.3
80,316	+				-0.0
80,317	-				-0.1
80,317	-				-0.5
80,325	+				+0.6
80,325	+				+0.4
80,325	+				+3.2
80,325	+				+0.6
80,325	+				-0.8
80,325	+				-0.0
80,325	+				-0.2
80,325	+				+0.7
80,325	+				-0.3
80,325	+				+0.8
80,326	-				-0.1
80,326	-				+0.1
80,326	-				-0.8
80,326	-				-0.5
80,326	-				+2.1
80,326	-				+0.1
80,326	-				-0.4
80,463	+		GFF4440	0.23	+0.5
80,463	+		GFF4440	0.23	-0.6
80,463	+		GFF4440	0.23	-0.4
80,463	+		GFF4440	0.23	-0.4
80,463	+		GFF4440	0.23	-0.4
80,463	+		GFF4440	0.23	-0.1
80,463	+		GFF4440	0.23	+0.8
80,463	+		GFF4440	0.23	+0.6
80,463	+		GFF4440	0.23	+0.2
80,463	+		GFF4440	0.23	-0.4
80,463	+		GFF4440	0.23	+0.5
80,463	+		GFF4440	0.23	+0.4
80,464	-		GFF4440	0.24	-0.8
80,464	-		GFF4440	0.24	+1.2
80,464	-		GFF4440	0.24	-0.2
80,464	-		GFF4440	0.24	+0.2
80,464	-		GFF4440	0.24	+0.2
80,464	-		GFF4440	0.24	+0.4
80,464	-		GFF4440	0.24	-1.6
80,464	-		GFF4440	0.24	-0.5
80,464	-		GFF4440	0.24	-0.4
80,628	+		GFF4440	0.42	-2.3
80,628	+		GFF4440	0.42	+0.4
80,628	+		GFF4440	0.42	+0.1
80,628	+		GFF4440	0.42	+0.6
80,629	-		GFF4440	0.42	+1.6
80,629	-		GFF4440	0.42	+0.6
80,629	-		GFF4440	0.42	-0.2
80,809	-		GFF4440	0.62	-0.5
83,015	-				-1.5
83,079	+				-0.1
83,080	-				+0.1
83,080	-				+0.1
83,140	+		GFF4443	0.11	-0.4
83,140	+		GFF4443	0.11	-0.5
83,141	-		GFF4443	0.11	-1.2
83,141	-		GFF4443	0.11	+0.5
83,171	+		GFF4443	0.17	-0.2
83,171	+		GFF4443	0.17	-0.5
83,171	+		GFF4443	0.17	-1.2
83,172	-		GFF4443	0.17	-0.8
83,172	-		GFF4443	0.17	-0.4
83,172	-		GFF4443	0.17	-0.5
83,200	+		GFF4443	0.22	-0.0
83,200	+		GFF4443	0.22	+0.4
83,200	+		GFF4443	0.22	-2.1
83,201	-		GFF4443	0.22	-0.7
83,201	-		GFF4443	0.22	-0.2
83,201	-		GFF4443	0.22	+1.6
83,201	-		GFF4443	0.22	+0.4
83,256	+		GFF4443	0.32	-0.7
83,256	+		GFF4443	0.32	-0.4
83,256	+		GFF4443	0.32	-0.4
83,256	+		GFF4443	0.32	+0.1
83,257	-		GFF4443	0.32	-1.4
83,257	-		GFF4443	0.32	-1.3
83,257	-		GFF4443	0.32	-1.5
83,257	-		GFF4443	0.32	-0.2
83,257	-		GFF4443	0.32	+1.1
83,257	-		GFF4443	0.32	+0.3
83,257	-		GFF4443	0.32	-0.2
83,257	-		GFF4443	0.32	-1.3
83,401	+		GFF4443	0.58	-2.3
83,401	+		GFF4443	0.58	+1.2
83,401	+		GFF4443	0.58	-0.5
83,401	+		GFF4443	0.58	-0.5
83,401	+		GFF4443	0.58	-1.6
83,401	+		GFF4443	0.58	-0.8
83,401	+		GFF4443	0.58	-0.5
83,401	+		GFF4443	0.58	-0.4
83,401	+		GFF4443	0.58	-0.8
83,401	+		GFF4443	0.58	-0.2
83,401	+		GFF4443	0.58	-0.6
83,401	+		GFF4443	0.58	+0.9
83,402	-		GFF4443	0.58	+1.2
83,402	-		GFF4443	0.58	-0.8
83,402	-		GFF4443	0.58	-1.1
83,402	-		GFF4443	0.58	-0.3
83,402	-		GFF4443	0.58	+0.5
83,402	-		GFF4443	0.58	+0.6
83,402	-		GFF4443	0.58	-1.0
83,402	-		GFF4443	0.58	+0.1
83,402	-		GFF4443	0.58	-1.7
83,402	-		GFF4443	0.58	-1.2